Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e16
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.60 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 488  QPPRSTTCTTVALRRKRFEFWLA 556
            QPP  TTCTT+  +  R   W++
Sbjct: 1083 QPPHDTTCTTLTSQTIRIS-WMS 1104


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 209 FVNTVFEETLINYEDIKKFFN 271
           F+ + +EE  I YE I+  FN
Sbjct: 284 FMKSQYEENNIEYEGIQDIFN 304



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = -1

Query: 292 MATYQLQVEKFFNVFVIDQSLFKD 221
           ++ Y++ ++KF  ++V+D  L  +
Sbjct: 126 VSAYKIAIDKFDRLWVLDSGLINN 149


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/55 (20%), Positives = 23/55 (41%)
 Frame = +2

Query: 83  LQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYIKQRQDKKIAFVNTVFEETLINY 247
           +   D+I RM +   T     +N  +  + +Y+     K   F+N  +    +N+
Sbjct: 513 IDRMDKIDRMDRMDRTNRMDRMNRMNRQMNEYMMALSMKLQKFINNDYNFNEVNF 567


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 119 TKNTYVYKMLNVEDNSIEKYIKQRQD 196
           T    +YK   ++  +IEK+ K+ Q+
Sbjct: 23  TTGHLIYKCGGIDKRTIEKFEKEAQE 48


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 119 TKNTYVYKMLNVEDNSIEKYIKQRQD 196
           T    +YK   ++  +IEK+ K+ Q+
Sbjct: 23  TTGHLIYKCGGIDKRTIEKFEKEAQE 48


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 467 NFDSNLPQPPRS 502
           N  S++PQPPRS
Sbjct: 51  NTISSVPQPPRS 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,272
Number of Sequences: 438
Number of extensions: 3557
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)