Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21e15
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 1.8
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 5.5
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 5.5
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 7.3
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 7.3
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 25 7.3
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 7.3
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 7.3
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 9.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 9.6
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 9.6
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 351 CIFSFCGFHCKP*KSLQVSWLP 286
C+ +HCKP L V W+P
Sbjct: 671 CLMLQHSYHCKPNSKLNVFWMP 692
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 454 RSVTLQQCSLSDSLGHLQGICVFLHQLVPI 365
+S++ L+DS+ L GIC+F+ ++ +
Sbjct: 580 KSISASLRDLNDSISKLDGICMFIVAVITL 609
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 301 LQGLLRFAMEATKAEDAPGNSELGPIDEERRKFLEDALKSLTVNIA 438
LQGLLR ++ K G S ++E+ L L+ + N+A
Sbjct: 503 LQGLLRMVVDNNKKVQEAGCSAFAILEEQAGPSLVPYLEPILTNLA 548
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 285 RLIW*DFILTSCRISQGSGNRVILRIIRTHILETQIFC--EISLVRNGIRN*TVKPTESR 112
RLIW + + +S G + +T++ E C +IS N I + + + TE+
Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424
Query: 111 LVLFKS 94
+FK+
Sbjct: 425 FTIFKA 430
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 7.3
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 373 PIDEERRKFLEDALKS-LTVNIAEVLLNAIKILTNTEXIRSIQFGEPLPEDVQAAFDN 543
P++ E+ F ED LKS LT +EVLL+ + + I+ + E L ++ ++ DN
Sbjct: 413 PLNVEKGSF-EDTLKSSLTKGNSEVLLDDLSD-PSVSSIKGNKTNEELEKEFKSTSDN 468
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 316 RFAMEATKAEDAPGNSELGPIDEERRKFLEDALKSLTVNIAEVL 447
R + E++ GN+ + +E RK +ED L + ++ VL
Sbjct: 62 RIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVL 105
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 257 LLVG*VRAPAIVLFCVLFELIF 192
LL+ + PAI+L+ ++F LIF
Sbjct: 379 LLMNKIMFPAIILYLIMFYLIF 400
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 226 IAGALTYPTRSQDEVLPNQPRQPRNLQGLL 315
I+ + PT+ ++ V PN P P + Q LL
Sbjct: 10 ISPTFSTPTKKRNLVFPNSPITPLHQQALL 39
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 92 YPVDSSNIYF*NFYKSSRNVYSRGVQLP 9
YP ++N+Y+ N Y+ S QLP
Sbjct: 388 YPSSANNVYYENSYQGVGTSMSDNYQLP 415
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 151 WNSKLNCKAY*ITTGFI*KFIQLIHQIFISKIFTNHL 41
WN L C + + + +F+QL QI K+F + +
Sbjct: 178 WNEFLKCLEWAVLSSLDSRFLQLSEQIRSIKLFDSSI 214
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 452 TPSKFSQTLXGFVAYSLGNHY 514
TPS+FS G Y+ G HY
Sbjct: 63 TPSEFSSNYGGRREYNRGGHY 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,876
Number of Sequences: 5004
Number of extensions: 39937
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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