Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e15
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0392 + 18485837-18485845,18486042-18486119,18486450-184865...    28   4.2  
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    27   7.4  
02_05_1291 - 35516715-35517251,35517339-35518185,35518480-355190...    27   9.8  

>02_03_0392 +
           18485837-18485845,18486042-18486119,18486450-18486550,
           18487000-18487087,18487753-18487897,18487968-18488050,
           18488189-18488254,18488572-18488628,18489084-18489206,
           18489645-18489696,18489830-18489944,18490018-18490147
          Length = 348

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = +1

Query: 226 IAGALTYPTRSQDEVLPNQPRQPRNLQGLLRFAMEATKAEDAPGNSELGPIDEE 387
           IA A  YP  S    LP+  R  R + GLL FA  A KAE      E   + +E
Sbjct: 128 IASAFHYPVYS----LPSVHRLDRLVSGLLIFAKNADKAESFRQQIEASLLQKE 177


>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +2

Query: 245 IRQEVKMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGTRNWDQLMK 385
           I    ++  Y++  G + + +  YG+Q+ P+ +  H G + +    K
Sbjct: 253 INDASELDGYRVLMGVRHSTRPHYGVQFHPESVATHYGRQIFQNFKK 299


>02_05_1291 -
           35516715-35517251,35517339-35518185,35518480-35519009,
           35519092-35519529
          Length = 783

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 322 QTVKVLAGFLAASADLVGLHLDFLSDKSGLRQSC 221
           Q V  L+ FL+++  +  LHL FLS+K  ++  C
Sbjct: 120 QKVIRLSQFLSSAPTIRDLHLSFLSEKIWVQPEC 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,288,045
Number of Sequences: 37544
Number of extensions: 235235
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)