Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e15
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 486 NPFSVCENFDGVQ*HFSNV 430
           NP   CE FD V   FS+V
Sbjct: 412 NPIDTCEMFDSVSILFSDV 430


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 514 VVVPQTVCYESXQCL*EF*WR-SVTLQQCSLSDSL 413
           +++PQ VC+   + + EF +R  + + Q  L   L
Sbjct: 75  IIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLL 109


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 241 SGLRQSCYSAYYSNSYFRNSN 179
           S L  SC    YSN+Y+ N+N
Sbjct: 305 SSLSNSCN---YSNNYYNNNN 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,193
Number of Sequences: 438
Number of extensions: 2569
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)