Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e13
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    56   3e-09
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    51   1e-07
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   4.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   9.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   9.9  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 22/48 (45%), Positives = 37/48 (77%)
 Frame = +1

Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEI 420
           G++V+ DSF +S+FKQ+FQR+F +D+  +  + FN T+EV  ++EL+I
Sbjct: 365 GYLVLSDSFTTSIFKQSFQRIFGRDSLNNMLLGFNATMEVLTTKELKI 412



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 480 HMLMREDLTQSLIMIQPILYSYSF 551
           HML  ED+  SLIMIQP L S+SF
Sbjct: 599 HMLNHEDVNNSLIMIQPTLQSFSF 622


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 24/48 (50%), Positives = 32/48 (66%)
 Frame = +1

Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEI 420
           G +V+ DSF +S+FKQ+FQR+F+ D  G  KM F   LEV  S+ L I
Sbjct: 369 GAIVLSDSFTTSIFKQSFQRLFSVDASGYLKMGFMANLEVLTSKGLTI 416



 Score = 33.9 bits (74), Expect = 0.016
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +3

Query: 480 HMLMREDLTQSLIMIQPILYSYSF 551
           HML   D+  SLIMIQP L SYSF
Sbjct: 604 HMLNVADVNDSLIMIQPTLQSYSF 627


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 355  KGDYKMAFNGTLEVKCSRELEIKNESPYLSDSV 453
            K + + AF G +E   +  LEI  ES  L D +
Sbjct: 961  KSEIEQAFQGDMEAIIAENLEIMVESQSLEDEI 993


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 14  YGFLLYCVSVFLVYFLYSAPK 76
           Y    Y +S+FL+Y L+S+ K
Sbjct: 200 YVLFTYFISIFLLYVLFSSTK 220


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = -3

Query: 485  HVHYLKVPYRCTESDKYGDSFLISSSRLHLTSKVPLNAIL*SPFVSLANTLWNVCLNRDE 306
            H  YL++  +  + ++     LI+   L   S VP +    +P++    T W+VC    +
Sbjct: 807  HTEYLRLRQKRLDKEQQECDLLIAE--LLGPSPVPPSRPSANPYLLYQKTQWHVCKTLAD 864

Query: 305  LNESPITM*PQS 270
             ++  +T  P++
Sbjct: 865  QDKQRVTGDPEA 876


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 353 VSLANTLWNVCLNRDELNESPITM*PQSEKDFVEPVLQPNSAL*SETGRH 204
           VS   TL ++    DEL+ S        E+DFV PV+  + A     GRH
Sbjct: 665 VSHHKTLRSLANALDELDISTSLATLAQEQDFVRPVVDDSHAHTVIQGRH 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,798
Number of Sequences: 5004
Number of extensions: 42760
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)