Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21e13
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 46 2e-05
08_02_0993 + 23390237-23390516,23391261-23391438,23391865-233919... 46 2e-05
09_04_0408 + 17352110-17352619,17352709-17352834,17353036-173532... 44 8e-05
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968 40 0.002
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 29 1.9
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 29 2.5
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 29 3.3
02_02_0640 - 12528075-12528363,12531326-12532311 28 5.8
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/49 (36%), Positives = 36/49 (73%)
Frame = +1
Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEIK 423
G +V+ +SF S+FK +F+R+F + + ++FNGTLE+ CS++++++
Sbjct: 399 GLVVLSESFGHSVFKDSFKRIF-EGGEQSLDLSFNGTLEINCSKDIKVQ 446
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 483 MLMREDLTQSLIMIQPILYSYSF 551
+L RE +T S+ MIQP L S+SF
Sbjct: 682 LLNRESITNSVAMIQPSLISFSF 704
>08_02_0993 +
23390237-23390516,23391261-23391438,23391865-23391940,
23392037-23392212,23392296-23392377,23392639-23392716,
23393525-23393686,23393980-23394243,23394698-23394802,
23395304-23395447
Length = 514
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/49 (36%), Positives = 35/49 (71%)
Frame = +1
Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEIK 423
G +V+ +SF S+FK++ QR+F + + D ++FNG E+ CS++++I+
Sbjct: 120 GIVVLAESFGHSVFKESLQRIF-QSSDNDLGLSFNGIFEINCSKDVKIQ 167
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 483 MLMREDLTQSLIMIQPILYSYSF 551
ML RE++ +++MIQP L SYSF
Sbjct: 359 MLNRENVANAVVMIQPSLISYSF 381
>09_04_0408 +
17352110-17352619,17352709-17352834,17353036-17353209,
17353669-17353830,17353998-17354140,17354835-17354910,
17355445-17355589,17355847-17355896,17356001-17356078,
17357153-17357314,17357406-17357669,17357929-17358033,
17358158-17358247,17358344-17358346
Length = 695
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/49 (36%), Positives = 34/49 (69%)
Frame = +1
Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEIK 423
G +V+ +SF S+FK + R+F + + D ++FNG LE+ CS++++I+
Sbjct: 339 GIVVLAESFGHSVFKDSLLRIF-QSSDNDLGLSFNGILEINCSKDVKIQ 386
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 483 MLMREDLTQSLIMIQPILYSYSF 551
+L RED+T +++MIQP L SYSF
Sbjct: 557 VLDREDVTNAVVMIQPSLISYSF 579
>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEI 420
G MV +SF S FK + +F ++ G M FN T+E+ SRE++I
Sbjct: 370 GLMVHTESFESEQFKACLRHIFNREGVGYLNMNFNATIEIVTSREVKI 417
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 483 MLMREDLTQSLIMIQPILYSYSF 551
ML RE + SLIMIQP L+ YSF
Sbjct: 603 MLNREGVVGSLIMIQPTLFQYSF 625
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -2
Query: 144 YCNFNANMQISNIHLHNTQYK-----FNLGAE*RKYTKNTLTQYNKKP 16
Y +F+A +ISN+HL ++ FNLG + Y K ++K P
Sbjct: 993 YLSFDAFFRISNLHLEADKFHFHYPVFNLGEDSNVYNKGKTIVFSKVP 1040
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 231 TIWLEYWLYEIFFTLRSHGDGRLVQFI 311
T+W +W ++ FFT GDGR+V +
Sbjct: 480 TVWRRHWFWKRFFT--DAGDGRIVDAV 504
>05_05_0322 +
24094831-24094992,24095147-24095216,24096184-24096307,
24096403-24096502,24096598-24096825,24096916-24097041,
24097092-24097376,24097490-24097648,24097751-24097929,
24098078-24098210
Length = 521
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 236 LAGVLALRNLFHFEVTW*WETRS-IHLCSNRRSKECSLKTQKEI---IRWHSTV 385
L GV A+ +E W E + IH+C N S++ L +K I ++W+ TV
Sbjct: 346 LVGVAAMLIASKYEEMWAPEVQDLIHVCDNAYSRQHILAMEKNILNRLQWNITV 399
>02_02_0640 - 12528075-12528363,12531326-12532311
Length = 424
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 TKSFSL*GHMVMGDSFNSSLF-KQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEIKNES 432
T+ F L GH + +F+S+ + K+ R T+ +A NG L V S +L ++ S
Sbjct: 317 TEVFMLDGHDIFRYNFSSNSWSKEATLRRKIPSTQSCGFIAMNGELYVLTSAKLPVETSS 376
Query: 433 PY 438
P+
Sbjct: 377 PW 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,206,208
Number of Sequences: 37544
Number of extensions: 239556
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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