Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e13
         (556 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001619-1|AAN71374.1|  773|Drosophila melanogaster RE35250p pro...    90   2e-18
AY060223-1|AAL25262.1|  312|Drosophila melanogaster GH01163p pro...    90   2e-18
AJ276482-1|CAB81549.1|  769|Drosophila melanogaster putative Sec...    90   2e-18
AE014297-319|AAF51979.2|  773|Drosophila melanogaster CG1250-PB,...    90   2e-18
AE014297-318|AAF51978.2|  773|Drosophila melanogaster CG1250-PA,...    90   2e-18
AE014296-3776|EAA45980.1|  359|Drosophila melanogaster CG40298-P...    29   3.2  

>BT001619-1|AAN71374.1|  773|Drosophila melanogaster RE35250p
           protein.
          Length = 773

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/48 (85%), Positives = 44/48 (91%)
 Frame = +1

Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEI 420
           GHMVMGDSFNSSLFKQTFQRVFA+D + D KMAFN TLEVKCSREL+I
Sbjct: 377 GHMVMGDSFNSSLFKQTFQRVFARDGRNDLKMAFNATLEVKCSRELKI 424



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +3

Query: 480 HMLMREDLTQSLIMIQPILYSYSF 551
           HMLMREDLTQSLIMIQPILYSYSF
Sbjct: 613 HMLMREDLTQSLIMIQPILYSYSF 636


>AY060223-1|AAL25262.1|  312|Drosophila melanogaster GH01163p
           protein.
          Length = 312

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/48 (85%), Positives = 44/48 (91%)
 Frame = +1

Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEI 420
           GHMVMGDSFNSSLFKQTFQRVFA+D + D KMAFN TLEVKCSREL+I
Sbjct: 175 GHMVMGDSFNSSLFKQTFQRVFARDGRNDLKMAFNATLEVKCSRELKI 222


>AJ276482-1|CAB81549.1|  769|Drosophila melanogaster putative Sec23
           protein protein.
          Length = 769

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/48 (85%), Positives = 44/48 (91%)
 Frame = +1

Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEI 420
           GHMVMGDSFNSSLFKQTFQRVFA+D + D KMAFN TLEVKCSREL+I
Sbjct: 373 GHMVMGDSFNSSLFKQTFQRVFARDGRNDLKMAFNATLEVKCSRELKI 420



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +3

Query: 480 HMLMREDLTQSLIMIQPILYSYSF 551
           HMLMREDLTQSLIMIQPILYSYSF
Sbjct: 609 HMLMREDLTQSLIMIQPILYSYSF 632


>AE014297-319|AAF51979.2|  773|Drosophila melanogaster CG1250-PB,
           isoform B protein.
          Length = 773

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/48 (85%), Positives = 44/48 (91%)
 Frame = +1

Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEI 420
           GHMVMGDSFNSSLFKQTFQRVFA+D + D KMAFN TLEVKCSREL+I
Sbjct: 377 GHMVMGDSFNSSLFKQTFQRVFARDGRNDLKMAFNATLEVKCSRELKI 424



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +3

Query: 480 HMLMREDLTQSLIMIQPILYSYSF 551
           HMLMREDLTQSLIMIQPILYSYSF
Sbjct: 613 HMLMREDLTQSLIMIQPILYSYSF 636


>AE014297-318|AAF51978.2|  773|Drosophila melanogaster CG1250-PA,
           isoform A protein.
          Length = 773

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/48 (85%), Positives = 44/48 (91%)
 Frame = +1

Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEI 420
           GHMVMGDSFNSSLFKQTFQRVFA+D + D KMAFN TLEVKCSREL+I
Sbjct: 377 GHMVMGDSFNSSLFKQTFQRVFARDGRNDLKMAFNATLEVKCSRELKI 424



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +3

Query: 480 HMLMREDLTQSLIMIQPILYSYSF 551
           HMLMREDLTQSLIMIQPILYSYSF
Sbjct: 613 HMLMREDLTQSLIMIQPILYSYSF 636


>AE014296-3776|EAA45980.1|  359|Drosophila melanogaster CG40298-PA
           protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 341 SLKTQKEIIRWHSTVL*KSNVAVNWKLKTNRRICLIQCTYM 463
           SLK  +E+  +++    ++N+  NWKLKTN   C +   ++
Sbjct: 181 SLKWIQELFVYYADT--QNNILENWKLKTNLECCKLYVNFL 219


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,005,840
Number of Sequences: 53049
Number of extensions: 442111
Number of successful extensions: 1060
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)