Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e13
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    71   6e-13
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    31   0.42 
U64604-1|AAF98623.1|  243|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z75545-4|CAD01087.1|  108|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 32/49 (65%), Positives = 39/49 (79%)
 Frame = +1

Query: 277 GHMVMGDSFNSSLFKQTFQRVFAKDTKGDYKMAFNGTLEVKCSRELEIK 423
           GH+VMGDSFNSSLFKQT+QR F KD+ G+ KM FN T+EVK    L+I+
Sbjct: 426 GHVVMGDSFNSSLFKQTYQRSFDKDSAGNLKMGFNATMEVKVGAGLKIE 474



 Score = 33.9 bits (74), Expect = 0.079
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +3

Query: 480 HMLMREDLTQSLIMIQPILYSYSF 551
           H+L  E++ +S  MIQP+L+SYSF
Sbjct: 663 HILFSENVLESTTMIQPVLFSYSF 686


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +2

Query: 17  GFLLYCVSVFLVYFLYSAPKLNLYCVLCRCILDICMFALKLQYVEIYK*NTITN*SRAET 196
           G +   + VFL+ FL    ++  + V+C C +D+C   L            IT   R  T
Sbjct: 494 GIMFLIIKVFLLVFL----EIGFFPVMCGCWMDVCTLPL----------FNITLSQRIAT 539

Query: 197 FCCAYLFLIIMHYLAGVL 250
           F  A    I +H++ G++
Sbjct: 540 FATAPFMSIFLHWMVGMV 557


>U64604-1|AAF98623.1|  243|Caenorhabditis elegans Hypothetical
           protein F49E7.2 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 343 AKDTKGDYKMAFNGTLEVKCSRELEIKNESP 435
           A D KGD    F G   +K SR+L +K+ESP
Sbjct: 168 AVDCKGDL---FKGCTTLKTSRDLRLKSESP 195


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 205 TTKRLCSTLVCYCILFINFYIL 140
           +T+R    L+C+   F+NFYIL
Sbjct: 44  STERTSFNLICFSRAFVNFYIL 65


>Z75545-4|CAD01087.1|  108|Caenorhabditis elegans Hypothetical
           protein K10D3.6 protein.
          Length = 108

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +2

Query: 23  LLYCVSVFLVYFLYSAPKLNLYCVLCRCIL-----DICMFALKLQY 145
           L+  ++ FL  F YS P L  + ++  C+L      +C+F +   Y
Sbjct: 18  LIISMATFLTLFFYSEPVLFAFVIIAVCLLVLSYPILCLFTVTRSY 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,091
Number of Sequences: 27780
Number of extensions: 243515
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)