Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21e13
(556 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 25 0.39
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 25 0.39
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 23 2.7
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 2.7
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 2.7
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 2.7
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 2.7
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 4.8
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 6.3
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 21 6.3
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 21 6.3
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 21 6.3
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.39
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 117 ISNIHLHNTQYKFNLGAE*RKYTKNTLTQYNKKPY 13
+SN +HN YK+N Y N YNKK Y
Sbjct: 84 LSNNTIHNNNYKYNYNN--NNYNNN---NYNKKLY 113
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.39
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 117 ISNIHLHNTQYKFNLGAE*RKYTKNTLTQYNKKPY 13
+SN +HN YK+N Y N YNKK Y
Sbjct: 84 LSNNTIHNNNYKYNYNN--NNYNNN---NYNKKLY 113
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 22.6 bits (46), Expect = 2.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -3
Query: 494 THQHVHYLKVPYRCTESDK 438
TH +H + PY C+ D+
Sbjct: 27 THMRLHTGEKPYHCSHCDR 45
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 117 ISNIHLHNTQYKFNLGAE*RKYTKNTLTQYNKKPY 13
+SN +HN YK+N Y N YNKK Y
Sbjct: 85 LSNNTIHNNNYKYN-------YNNN---NYNKKLY 109
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 117 ISNIHLHNTQYKFNLGAE*RKYTKNTLTQYNKKPY 13
+SN +HN YK+N Y N YNKK Y
Sbjct: 85 LSNNTIHNNNYKYN-------YNNN---NYNKKLY 109
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 117 ISNIHLHNTQYKFNLGAE*RKYTKNTLTQYNKKPY 13
+SN +HN YK+N Y N YNKK Y
Sbjct: 85 LSNNTIHNNNYKYN-------YNNN---NYNKKLY 109
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 117 ISNIHLHNTQYKFNLGAE*RKYTKNTLTQYNKKPY 13
+SN +HN YK+N Y N YNKK Y
Sbjct: 85 LSNNTIHNNNYKYN-------YNNN---NYNKKLY 109
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 4.8
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = -2
Query: 96 NTQYKFNLGAE*RKYTKNTLTQYNKKPY 13
+ YK++ Y N YNKK Y
Sbjct: 319 SNNYKYSNYNNYNNYNNNNYNNYNKKLY 346
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 6.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 8 ISYGFLLYCVSVFLVYFLY 64
+ YG +Y V +FL+ + Y
Sbjct: 218 VCYGIWVYFVPLFLIIYSY 236
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.4 bits (43), Expect = 6.3
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = -2
Query: 117 ISNIHLHNTQYKFNLGAE*RKYTKNTLTQYNKKPYDIH 4
+SN +HN N Y N Y K Y+I+
Sbjct: 85 LSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNIN 122
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.4 bits (43), Expect = 6.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +2
Query: 44 FLVYFLYSAPKLNLYCVLCRCILDICMFAL 133
+++ + S P N+ +L + I+DIC +
Sbjct: 67 YVLIHIGSVPVNNINLILLQNIIDICWITM 96
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.4 bits (43), Expect = 6.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 8 ISYGFLLYCVSVFLVYFLY 64
+ YG +Y V +FL+ + Y
Sbjct: 94 VCYGIWVYFVPLFLIIYSY 112
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,299
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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