Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21e08
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal pr... 81 4e-16
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 29 0.96
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 28 2.9
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 3.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 3.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 3.9
U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z83219-5|CAM35834.1| 390|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical pr... 26 9.0
AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical ... 26 9.0
>AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 28 protein.
Length = 65
Score = 80.6 bits (190), Expect = 4e-16
Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Frame = +3
Query: 69 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 227
MDK LARV KV+GRTGSQGQCTQV+VEFI + +R IIRNVKGPVR+GDILT
Sbjct: 1 MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 29.5 bits (63), Expect = 0.96
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 11 TRQLWCTCVNCIKLDITSQNG*TQRSCSCREST 109
TRQ C C ++ + Q Q SCSC+ ST
Sbjct: 23 TRQASCGCAQSVQPTCSCQQASQQYSCSCQPST 55
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 158 ELDLHLSTLALRTSTAEYFHDTSKNVGFIHF 66
++D H+ R S +EYF +T +N+ F
Sbjct: 505 DVDFHIIRNLARASNSEYFEETCRNINNFEF 535
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 141 EYTGPENQYGRVLSRHEQERWVYP 70
E TGPE+Q LS++E+ WVYP
Sbjct: 8246 EPTGPEDQK---LSKNEKGEWVYP 8266
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 141 EYTGPENQYGRVLSRHEQERWVYP 70
E TGPE+Q LS++E+ WVYP
Sbjct: 9290 EPTGPEDQK---LSKNEKGEWVYP 9310
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 141 EYTGPENQYGRVLSRHEQERWVYP 70
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQK---LSKNEKGEWVYP 8311
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 141 EYTGPENQYGRVLSRHEQERWVYP 70
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQK---LSKNEKGEWVYP 9355
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 141 EYTGPENQYGRVLSRHEQERWVYP 70
E TGPE+Q LS++E+ WVYP
Sbjct: 8291 EPTGPEDQK---LSKNEKGEWVYP 8311
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 141 EYTGPENQYGRVLSRHEQERWVYP 70
E TGPE+Q LS++E+ WVYP
Sbjct: 9335 EPTGPEDQK---LSKNEKGEWVYP 9355
>U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical
protein F09C12.2 protein.
Length = 418
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 141 QVKVEFIGETSRQIIRNVKGP-VRD 212
Q+ +E++G Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291
>Z83219-5|CAM35834.1| 390|Caenorhabditis elegans Hypothetical
protein C31C9.8 protein.
Length = 390
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 26 CTCVNCIKLDI-TSQNG*TQRSCSCRESTRP 115
C V+C+ L TS+NG R SC EST+P
Sbjct: 182 CPVVDCLVLTSWTSRNG---RLMSCMESTKP 209
>Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 220 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 297
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
>AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 220 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 297
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,768,786
Number of Sequences: 27780
Number of extensions: 161017
Number of successful extensions: 386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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