Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e06
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    60   2e-10
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   0.70 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   2.1  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   2.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   2.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   4.9  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   6.5  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    24   8.6  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    24   8.6  

>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 32/92 (34%), Positives = 52/92 (56%)
 Frame = +3

Query: 51  SKKRMWRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKYSDISGLPAPYMDRHSKL 230
           ++ R  R+L+QI+  D     P++   Y SI APP+  P  KY D++GL A Y D  ++L
Sbjct: 26  AQPRRNRNLRQIIQNDPVQNEPSK-FSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPKTRL 84

Query: 231 YFSNAEEFATVRNLPMDITAGYLQLRGANTIV 326
            + N E +  +R LP      YL+LR ++ ++
Sbjct: 85  RYHNKEIYGLIRELPSGADQEYLKLRSSDVVL 116


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 117 NEAVLYYSINAPPTFKPIKKYSDISGLPAP 206
           N + L   +  P  F PI   SDI GLP P
Sbjct: 163 NGSELNVGVLGPSLFNPIGNLSDIPGLPQP 192


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 171 KKYSDISGLPAPYMDRHSKLYFSNAEEFATVRN 269
           K Y D  G P P  D H++L   +   F+ + N
Sbjct: 749 KAYFDSEGKPHPITDSHNRLLVPSTRTFSQLLN 781


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 120 EAVLYYSINAPPTFKPIKKYSDISGL 197
           E V + SIN  P+FK + K S IS L
Sbjct: 283 ETVGWVSINGIPSFKSLVKLSGISSL 308


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +1

Query: 52  LKSVCGDL*NKS*QPIEHYHGQMKQFYIIQ*MLRQHSNLLKNIQTYQDYQHHIWIDTQNF 231
           L  V  D+ ++  + +++Y G   QFY  +    +  N L+  +   +Y+ H+      F
Sbjct: 414 LNEVATDIIHQHSERLDYYKGNFSQFYATR--EERCKNQLREYEKQMEYRKHLQSFIDKF 471

Query: 232 IFLMLKS 252
            +   KS
Sbjct: 472 RYNAAKS 478


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 130 KTASFGHGNARSAVKICFK-DLHIRFLDPL 44
           KT +  HGN    V +C K    IRFLDPL
Sbjct: 265 KTVAKAHGNIAQLV-VCTKVGPTIRFLDPL 293


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 183 DISGLPAPYMDRHSKLY 233
           DIS  P  YMD+H+K+Y
Sbjct: 234 DISYDPFYYMDKHNKVY 250


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 299 TTQRSKHYRGIRCMILYAVNTYLL*KHIDYH 391
           T + S H + I C+ + + NT LL   +D H
Sbjct: 243 TKKLSNHQKSITCLAMNSENTRLLSGGLDGH 273


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 135 YSINAPPTFKPIKKYSD 185
           Y IN PP  +P++ Y+D
Sbjct: 83  YPINDPPEGRPVRVYAD 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,669
Number of Sequences: 5004
Number of extensions: 34523
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)