Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21e06
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 64 3e-11
08_01_0618 - 5394841-5395036,5395179-5395244,5395727-5395769,539... 30 0.68
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133 30 0.90
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 27 4.8
01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168 27 6.3
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 23 6.9
08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152... 27 8.3
05_05_0272 - 23738514-23738817,23739382-23740748 27 8.3
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 64.5 bits (150), Expect = 3e-11
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +3
Query: 42 KSGSKKRMWRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKYSDISGLPAPYMDRH 221
K S+ R W+ L+ +L + A P + Y +I +PP+ P K+Y DI+G APY+D
Sbjct: 29 KGQSRGRQWKHLRLLLQSSDATSLPPDRPNYLNIQSPPSIYPPKRYCDITGFEAPYVDPR 88
Query: 222 SKLYFSNAEEFATVRNLP 275
+KL +++ E F +R LP
Sbjct: 89 TKLRYADPEVFKQIRMLP 106
>08_01_0618 -
5394841-5395036,5395179-5395244,5395727-5395769,
5396119-5396238,5396653-5396731,5396910-5397177,
5397262-5397305,5397431-5397502,5397756-5397825,
5397929-5397999
Length = 342
Score = 30.3 bits (65), Expect = 0.68
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +3
Query: 69 RSLKQILTADRALPWPNEAVLYYSINAPPTFK------PIKKYSDISGLPAPYMDRHSKL 230
R+L+++L + + +AV++ ++ PT + P K ++GLPA Y D + L
Sbjct: 207 RNLERVLAREEEVK--KKAVVHKAVYEGPTIRFCSRDDPEKSICAVTGLPAKYRDPKTGL 264
Query: 231 YFSNAEEFATVR 266
++ E F +R
Sbjct: 265 PYATKEAFKIIR 276
>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
Length = 474
Score = 29.9 bits (64), Expect = 0.90
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 75 LKQILTADRA-LPWPNEAVLYYSINAPPTFKPIKKYSDISGLPAPYMDRHSKLYFSNAEE 251
LK ++D A +P + + + NAP P+ +D + P P +H + N +
Sbjct: 145 LKATASSDVAPVPIDDVPSVVPAANAPVRSSPVMPAADAASAPGPSTQKHQEETSGNPSD 204
Query: 252 FATVRNLPMDITAGYL 299
A N M+ T+ YL
Sbjct: 205 TACQMNELMEKTSRYL 220
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 27.5 bits (58), Expect = 4.8
Identities = 29/104 (27%), Positives = 38/104 (36%)
Frame = +3
Query: 12 CFXRENKFIVKSGSKKRMWRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKYSDIS 191
C +E K I + K R L Q + L PN Y S + T +Y +S
Sbjct: 273 CAIKEVKVISDDSNSKECLRQLHQEIVLLSQLSHPNIVQYYGSDLSSETLSVYLEY--VS 330
Query: 192 GLPAPYMDRHSKLYFSNAEEFATVRNLPMDITAGYLQLRGANTI 323
G H L A A +RN I +G L G NT+
Sbjct: 331 GGSI-----HKLLQEYGAFGEAVLRNYTAQILSGLAYLHGRNTV 369
>01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168
Length = 553
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 66 WRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKYSDISG 194
WRS + LTA A P P + Y IN T K + G
Sbjct: 323 WRSFRWNLTASAARPNPQGSYHYGQINITRTIKLCTSKGKVDG 365
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 23.4 bits (48), Expect(2) = 6.9
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 33 FIVKSGSKKRMWRSLKQ 83
F + +GSK+R+W+S K+
Sbjct: 538 FDINTGSKERIWQSDKE 554
Score = 21.8 bits (44), Expect(2) = 6.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 60 RMWRSLKQILTADRALPWPNEAVLY 134
++W KQ+ D P+P A LY
Sbjct: 595 QIWPEKKQVQITDFPHPYPQLASLY 619
>08_02_0180 +
13912769-13913008,13914723-13915006,13915118-13915214,
13915358-13915393,13916665-13916810,13917002-13917107,
13917358-13917417,13917787-13917876
Length = 352
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 153 AEHLLNNIKLLHLAMVMLDRLLRFVLKIS 67
A+ LLN +KLL + + +D+LLR L S
Sbjct: 315 AKILLNTVKLLTIIIAYMDQLLRSNLNFS 343
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 66 WRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKYSDISG 194
WRS + LTA A P P + Y IN T + + I G
Sbjct: 327 WRSFRWNLTASAARPNPQGSYHYGQINITRTIRLMVSRGHIDG 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,160,725
Number of Sequences: 37544
Number of extensions: 197907
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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