Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21e05
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   150   9e-38
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.64 
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.5  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   5.9  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   7.9  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   7.9  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  150 bits (364), Expect = 9e-38
 Identities = 75/131 (57%), Positives = 92/131 (70%), Gaps = 1/131 (0%)
 Frame = +1

Query: 88  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 267
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 268 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP 447
           KVRAGRGFTL E++AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 448 -KGKKVLKGEA 477
            K  +  KG+A
Sbjct: 128 RKAGQPKKGDA 138


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 300  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 181
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 281 VEDSLFVKLGPQD*TQYLPERLELL 355
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 92  LMDISTRIGKDLLKLGLTSQLDDTAES 172
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 317 PAALISRRVNPLPARTLVW 261
           P ALI+ +++ LP R+L+W
Sbjct: 241 PRALITVKLSQLPLRSLLW 259


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 38  LCRGKTPTSKW--ARGII*YLMDISTRIGKDLL--KLGLTSQLDDTAESKIE 181
           +CRGK P   W     +I  L  +   + +D+L   L   S L D A  KI+
Sbjct: 233 MCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQ 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,585
Number of Sequences: 5004
Number of extensions: 42218
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)