Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21e01
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.016
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.15
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.26
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.34
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 29 0.60
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 28 1.0
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 28 1.4
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 1.8
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 27 1.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 3.2
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 27 3.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 3.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.2
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 4.2
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 6.5
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 7.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 7.4
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 7.4
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.4
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 9.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 9.7
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 9.7
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 25 9.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 335 PGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPK 436
P +++P L P P PPPS SP P PP+
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSP-PNSPPR 273
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Frame = +2
Query: 329 PAPGDQMPDL--DVPVPE------KTPPPSEAPRDSPSPTEPP 433
PAP Q+P +VPVP + PP S AP +PS T PP
Sbjct: 1479 PAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPP 1521
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 332 APGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEP 430
AP P + VP P PP P +P P P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 332 APGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPP 433
AP P P PPP AP P P PP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAP---PMPAGPP 1728
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 329 PAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKLN 442
P P + +P+ P+P + P P E + P P EPP N
Sbjct: 108 PLPNEPVPE--EPLPGEPPLPDEPVPEEPLPGEPPLPN 143
Score = 28.7 bits (61), Expect = 0.79
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 329 PAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEP-PKLN 442
P P + +P + P+P++ P P + P P EP P+ N
Sbjct: 113 PVPEEPLPG-EPPLPDEPVPEEPLPGEPPLPNEPVPETN 150
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 365 PVPEKTPPPSEAPRDSPSPTEPP 433
P+P + P P+E + P P EPP
Sbjct: 102 PLPREPPLPNEPVPEEPLPGEPP 124
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.34
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 326 APAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKL 439
+PA +P P+P PPP++ SP P L
Sbjct: 153 SPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Frame = +2
Query: 320 VIAPAPGDQMPDLDVPVPEKTPPP--SEAP----RDSPSPTEPP 433
V +P +P P+P K PPP S+AP PS PP
Sbjct: 181 VKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 329 PAPGDQMPDLDVPVPEKTPP-PSEAPRDSPSPTEPP 433
P P + P P PP PS+AP PS PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAP-PIPSSLPPP 174
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 29.1 bits (62), Expect = 0.60
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 326 APAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKLNLQMTAAEMRAHLAAK 487
A P D+ PD VP PPPS P PT ++ + T + H A+K
Sbjct: 15 ADLPQDEAPD---SVPGLVPPPSNFVPVYPEPTYSDTVSKKGTIVRVVRHTASK 65
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 329 PAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKLNLQMTAA--EMRAHLAAKKKFDP 502
P G P+ V +PE S+ DS K+NL A E+R L ++K+DP
Sbjct: 906 PGYGSLSPNTSVELPEINSDYSD---DSDDEGNKKKVNLPSWAESPELREQLKRQQKWDP 962
Query: 503 KKV 511
K+
Sbjct: 963 DKI 965
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 325 YHQQLGVIRSLLDASYHLLVGLAGDTMTVHFKDAVSALQASGFCRRAI 182
Y +Q+ V+R + +L D + HFKDAV L+ +G+ ++ +
Sbjct: 379 YAKQVAVVRQQYPSEDFILPD--ADRIRFHFKDAVKLLKEAGYRKQLV 424
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 149 GKPGQYIGKVDDGSPAETAGLKRGDRILEVNGHSIAGETHKQVVARIKERPDD 307
G G Y+G + GSPA L+ I+ V+GH I T + E+P D
Sbjct: 895 GPEGVYVGSILYGSPALNM-LRAAHWIVAVDGHDI--NTFDDFYHMLLEKPTD 944
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 606 KQQHRRVDAHCTLITHHHSFFTMSNLDLR 520
K +++ +D L THHH+ + NL+L+
Sbjct: 48 KLKNKEIDLQAILTTHHHADHSGGNLNLK 76
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/85 (20%), Positives = 36/85 (42%)
Frame = +2
Query: 8 RERAALLARTPTTDMSANGSAAIEPRLCHVRKTPDFDGYGFNLHAEKGKPGQYIGKVDDG 187
R A+ AR ++ A+ + + K PD + +HA + KP ++ ++
Sbjct: 716 RSGTAINARLDVVELIADNPVIRDTIWGFLHKLPDLERLISRVHAGRSKPADFVRVLEGF 775
Query: 188 SPAETAGLKRGDRILEVNGHSIAGE 262
+A + + +EV ++ GE
Sbjct: 776 QRINSAFDQLREEFMEVAEGTLLGE 800
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 326 APAPGDQMPDL--DVPVPEKTPPPSEAPRDSPSPTEPPKLNLQMTAAE 463
AP P P+ + + PP S+A R P PTEPP + T++E
Sbjct: 78 APPPYTAEPEARYNSTIHNPMPPMSQAYR--PPPTEPPTVPAYETSSE 123
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 299 PDDAELLVIAPAPGDQMPDLDVPVPEKTPPPSEAPRDSPSP 421
P L I APG MP+L++ P PP P P+P
Sbjct: 500 PPGVPLPPIPGAPG--MPNLNMSQPPMVPPGMALPPGMPAP 538
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 302 DDAELLVIAPAPGDQMPDLDVPVPEKTPPPSEAP-RDSPSPTEPP 433
+ +LL+ +P P + P P P P AP P P PP
Sbjct: 723 EQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Frame = +2
Query: 299 PDDAELLVIAPAPGDQMPDLDVPV----PEKTPPPSEAPRDSPSPTEPP 433
P ++V PAP P+ P PPP A P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +2
Query: 296 RPDDAELLVIAPAPGDQMPDLDV-----PVPEKTPPPSEAPRD-SPSPTEP 430
RPD +L +PG + LD+ P PE PP++ P D SP EP
Sbjct: 146 RPDSQKL-----SPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEP 191
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 453 PRPRCEHISPPRRSSTLRKCRWTLGPSLTS*RNCDG 560
P P H SPPR+ S + W + PS+++ +N G
Sbjct: 229 PPPPVLH-SPPRKVSAQEQQDWQIPPSISNWKNPKG 263
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 248 SIAGETHKQVVARIKERPDDAELLVIAPAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTE 427
S++ ET ++ +++KE + L + Q P +P + + AP+ SP +
Sbjct: 574 SLSEETKQEKPSKLKETVESKRL---STGVQKQSPAASKEIPVTSGSQTTAPKPSPWKSL 630
Query: 428 PPK 436
PPK
Sbjct: 631 PPK 633
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.2 bits (45), Expect(2) = 6.5
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +2
Query: 368 VPEKTPPPSEAPRDSPSPTEPPKLNLQMT 454
+P P P +P P PP L Q T
Sbjct: 223 IPPTYTPKQADPLPAPPPPPPPTLPPQST 251
Score = 21.4 bits (43), Expect(2) = 6.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +2
Query: 326 APAPGDQMPDLDVPVPEKTPPPS 394
A AP +P P P PPP+
Sbjct: 176 AAAPATSLPSDYNPPPPPPPPPA 198
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 242 GHSIAGETHKQVVARIKERPDDAELLVIAPAPGDQMPDLDVPVPEKTPPPSEAPRDSPSP 421
GHS A E + +I+E P+ + D + ++ V E +PP + A +P
Sbjct: 542 GHSEAIERLALLENQIQE-PEPENITSSQYPNQDVIKEIPVTASETSPPHAPAVSSTPVT 600
Query: 422 TEPPKLNLQMT 454
+ PP ++T
Sbjct: 601 SAPPVSQTKVT 611
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +2
Query: 371 PEKTPPPSEAPRDSPSPTEPP---KLNLQMTAAEMRAHLAAKKKFDPKKVPMDLRSKFDI 541
P PPP P P P PP K T A+ +L + +K +SKF +
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQ-SGNLEKQLNERARKWRASQKSKFGV 68
Query: 542 VKK 550
+K
Sbjct: 69 KRK 71
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 365 ARPNRASGPPEPVLSP 318
+RP+ S PPEP+LSP
Sbjct: 574 SRPSPLSLPPEPLLSP 589
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +2
Query: 368 VPEKTPPPSEAPRDSPS---PTEPPKLNLQMTAAEMRAHLAAKKKFDPK 505
+ + P PSE+PR S S P PP Q +A K FD K
Sbjct: 251 IDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSK 299
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 326 APAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPP 433
A AP +P PVP T P S +P+ PP
Sbjct: 1029 ADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP 1064
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 329 PAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEP 430
P P P VP+P TPP ++ +PS P
Sbjct: 1035 PVPSTAPP---VPIPTSTPPVPKSSSGAPSAPPP 1065
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 329 PAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPP 433
P+ +P V VP PP + P +PS PP
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/53 (20%), Positives = 24/53 (45%)
Frame = +2
Query: 284 RIKERPDDAELLVIAPAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKLN 442
++ E +DA+ ++A P ++ +PE + +PSP + L+
Sbjct: 545 KVTEPSNDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSPEKQKVLS 597
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 323 IAPAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEP 430
I P P + VP P PP AP +P +P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 329 PAPGDQMPDLDVPVPEKTPPPSEAP-RDSPSPTEP 430
P P +P VPVP PP AP ++PS + P
Sbjct: 1220 PTPSAGLPP--VPVPTAKAPPVPAPSSEAPSVSTP 1252
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 250 TMTVHFKDAVSALQASGFCR 191
TMT+ D VS +AS FC+
Sbjct: 1246 TMTLRLNDGVSDKRASAFCK 1265
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 383 GSFPAPA-RPNRASGPPEPVLSPAARRHQVAP 291
G+ +PA +P PP P +PA + H P
Sbjct: 716 GAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPP 747
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = +2
Query: 332 APGDQMPDLDVPV-PEKTPPP------SEAPRDSPSPTEPPK 436
AP +P P P ++PPP S PR P+ PP+
Sbjct: 401 APTSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSLPPR 442
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 341 DQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPK 436
+ P P P+ P +P+ P+ +EP K
Sbjct: 170 ESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVK 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,161
Number of Sequences: 5004
Number of extensions: 52543
Number of successful extensions: 265
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -