Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d24
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021...   147   7e-36
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622...   136   1e-32
03_01_0512 - 3849275-3849333,3849429-3849531,3849610-3849654,384...   117   8e-27
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092...    69   3e-12
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    29   3.8  
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189     29   5.0  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    28   8.7  

>07_03_1064 +
           23700662-23700787,23701709-23701870,23701983-23702101,
           23703128-23703202,23704387-23704480,23704856-23704915,
           23705083-23705151,23705457-23705555,23706201-23706245,
           23706339-23706441,23706665-23706723
          Length = 336

 Score =  147 bits (357), Expect = 7e-36
 Identities = 77/201 (38%), Positives = 122/201 (60%), Gaps = 6/201 (2%)
 Frame = +2

Query: 143 LFGKSQKSPAELVRSLKDAVTALER------GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 304
           LF    ++PA++VR  ++ +  L+       GD K E+   ++SKN+  +K++LYG  ++
Sbjct: 4   LFKSKPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGNGES 63

Query: 305 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 484
           EP T+  V QL QE +             +++ E +KD  QV  N+ R+Q+ ++    EY
Sbjct: 64  EPVTEACV-QLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVASEY 122

Query: 485 ICTKPEILFTLRSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFD 664
           +    ++L TL SGYE+ +IA + G+MLREC R++++A+ +L SD    FF Y+++  FD
Sbjct: 123 LEANKDLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQLPNFD 182

Query: 665 IASDAFSTFKELLTRHKILCA 727
           IASDA +TFKELLTRHK   A
Sbjct: 183 IASDASATFKELLTRHKATVA 203


>07_03_1492 +
           26960876-26960986,26961910-26962074,26962153-26962271,
           26962559-26962633,26963063-26963156,26963239-26963298,
           26963474-26963539,26963622-26963720,26964027-26964035
          Length = 265

 Score =  136 bits (330), Expect = 1e-32
 Identities = 74/187 (39%), Positives = 115/187 (61%)
 Frame = +2

Query: 155 SQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVAQ 334
           ++ SP ELVRS+K+++ AL+   +   KA EDV KN+  ++  L G  + EP  + ++ Q
Sbjct: 12  ARPSPQELVRSIKESLLALDT--RTGAKALEDVEKNVSTLRQTLSGDGEVEPNQEQVL-Q 68

Query: 335 LAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTKPEILFT 514
           +A E+               + +EG+KD+A  ++ +LR+++      V+YI    ++L  
Sbjct: 69  IALEICKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEAYCCVQYIENHFDLLDF 128

Query: 515 LRSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFDIASDAFSTFK 694
           L   Y++ E+A NCG MLREC +Y  LAK +L S  F  FF+YVE+S FDIASDA +TFK
Sbjct: 129 LVVCYKNLEVALNCGNMLRECIKYPTLAKYILESSSFELFFQYVELSNFDIASDALNTFK 188

Query: 695 ELLTRHK 715
           +LLT+H+
Sbjct: 189 DLLTKHE 195


>03_01_0512 -
           3849275-3849333,3849429-3849531,3849610-3849654,
           3849876-3849974,3850078-3850146,3850251-3850310,
           3850540-3850633,3850875-3850949,3851101-3851219,
           3851433-3851600,3852743-3852928
          Length = 358

 Score =  117 bits (282), Expect = 8e-27
 Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 10/201 (4%)
 Frame = +2

Query: 143 LFGKSQKSPAELVRSLKDAVTALER-----GDK---KAEKAQEDVSKNLVLIKNMLYGTS 298
           LF    + P E+VR  ++ +  L       GDK   K E    D++K++  +K++LYG  
Sbjct: 22  LFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGNG 81

Query: 299 DAEPQTDIIVAQLAQEMYXXXXXXXXXXXXXR--IDFEGKKDVAQVFNNVLRRQIGTRSP 472
           +A+P  D   +QL +E +                +D E +KDV QV  N+LR+++  R  
Sbjct: 82  EADP-VDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140

Query: 473 TVEYICTKPEILFTLRSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEV 652
             +Y+    ++L  L SGY++ +IA +   +LR+C R++  A+ +L S     FF Y++ 
Sbjct: 141 ASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQY 200

Query: 653 STFDIASDAFSTFKELLTRHK 715
             F+IASDAF TFKELLTRH+
Sbjct: 201 PDFNIASDAFKTFKELLTRHR 221


>03_03_0021 +
           13808274-13808384,13809036-13809200,13809249-13809278,
           13809279-13809397,13809696-13809770,13812071-13812146,
           13813224-13813289,13813364-13813462,13814072-13814174,
           13814338-13814411
          Length = 305

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 9/158 (5%)
 Frame = +2

Query: 164 SPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNMLYGTSDAEPQTDIIVA---Q 334
           +P E+VRS+KD+  AL    K   +A E+V KNL  ++ ML G  +AEP  + ++    +
Sbjct: 15  TPEEVVRSIKDSFQALHT--KNGARALEEVEKNLSSLRQMLSGDGEAEPNQEQVLQITLE 72

Query: 335 LAQE------MYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEYICTK 496
           + +E      +                + + +KD+   +  +LR++       V+YI   
Sbjct: 73  ICKEDVLSLFVQNLPSLGWGPVEIVSSELQVRKDLVHCWCILLRQKFDESYCCVKYIENH 132

Query: 497 PEILFTLRSGYEHQEIASNCGTMLRECARYEALAKIML 610
            E+L  L   Y++ ++A NCG MLREC +Y  L K+ +
Sbjct: 133 LELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKVRI 170


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -3

Query: 181 NKLRRAFLRLTKERHSIKATWAGDISNYVYIRLYFWINYC-NFQ---YHDNSHEWNSCDV 14
           NKLR A   LTK+   ++     ++   VY+R   W+N C  ++   Y   S + ++ D+
Sbjct: 289 NKLRHANEDLTKQVEGLQMNRFSEVEELVYLR---WVNACLRYELRNYQAPSEKISARDL 345

Query: 13  NTTI 2
           N T+
Sbjct: 346 NKTL 349


>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
          Length = 470

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 149 GKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIK 277
           G+ +K   EL+R + +    +E   K+ EKAQE++ K   +++
Sbjct: 224 GRVEKICTELIRGIGEDKAEVEALKKETEKAQEELQKEREMLQ 266


>02_04_0481 +
           23284296-23284448,23284553-23284753,23284855-23287971,
           23288510-23289353,23289468-23290120,23290573-23290676,
           23290898-23291000
          Length = 1724

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 128 LNTMPLFGKSQKSPAELVRSLKDAVTALERGDKKAEKAQEDVSKNLVLIKNML 286
           L  +  FG+  K+ AE ++S+K A+  +    KKA+   E V   L   K  L
Sbjct: 300 LQKVNTFGEENKNLAEELQSVKAALDVVNAEAKKAKAEFEQVEHKLSTTKEKL 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,051,724
Number of Sequences: 37544
Number of extensions: 319798
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)