Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d24
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...   213   1e-55
U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical pr...   211   3e-55
Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical pr...   211   4e-55
AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.      29   2.6  
AF039716-8|AAB96738.1|  384|Caenorhabditis elegans Paf-acetylhyd...    29   2.6  
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    29   2.6  

>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score =  213 bits (519), Expect = 1e-55
 Identities = 112/217 (51%), Positives = 145/217 (66%), Gaps = 16/217 (7%)
 Frame = +2

Query: 125 RLNTMPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKN 262
           R   MPL FGKS KSPA++V++L++ +T L++              DKK +KA ++VSKN
Sbjct: 256 RRKVMPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKN 315

Query: 263 LVLIKNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFN 436
           + +IK+ +YG   AEP ++ +V  AQLAQE+Y             + +FE KKDV Q+FN
Sbjct: 316 VAMIKSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFN 375

Query: 437 NVLRRQIGTRSPTVEYICTKPEILFTLRSGYEHQEIASNCGTMLRECARYEALAKIMLYS 616
           N+LRRQIGTRSPTVEY+  +PEIL  L  GY   +IA  CG MLRE  R++ LAKI+LYS
Sbjct: 376 NLLRRQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLRESIRHDHLAKIILYS 435

Query: 617 DDFYNFFRYVEVSTFDIASDAFSTFKELLTRHKILCA 727
           D FY FF YV+   FDI+SDAFSTFKEL TRHK + A
Sbjct: 436 DVFYTFFLYVQSEVFDISSDAFSTFKELTTRHKAIIA 472


>U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical
           protein R02E12.2b protein.
          Length = 377

 Score =  211 bits (516), Expect = 3e-55
 Identities = 111/213 (52%), Positives = 144/213 (67%), Gaps = 16/213 (7%)
 Frame = +2

Query: 137 MPL-FGKSQKSPAELVRSLKDAVTALER-------------GDKKAEKAQEDVSKNLVLI 274
           MPL FGKS KSPA++V++L++ +T L++              DKK +KA ++VSKN+ +I
Sbjct: 1   MPLLFGKSHKSPADVVKTLREVLTILDKLPPPKLDKDGNIQSDKKYDKALDEVSKNVAMI 60

Query: 275 KNMLYGTSDAEPQTDIIV--AQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLR 448
           K+ +YG   AEP ++ +V  AQLAQE+Y             + +FE KKDV Q+FNN+LR
Sbjct: 61  KSFIYGNDSAEPSSEHVVQVAQLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNLLR 120

Query: 449 RQIGTRSPTVEYICTKPEILFTLRSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFY 628
           RQIGTRSPTVEY+  +PEIL  L  GY   +IA  CG MLRE  R++ LAKI+LYSD FY
Sbjct: 121 RQIGTRSPTVEYLGARPEILIQLVQGYSVPDIALTCGLMLRESIRHDHLAKIILYSDVFY 180

Query: 629 NFFRYVEVSTFDIASDAFSTFKELLTRHKILCA 727
            FF YV+   FDI+SDAFSTFKEL TRHK + A
Sbjct: 181 TFFLYVQSEVFDISSDAFSTFKELTTRHKAIIA 213


>Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical
           protein Y53C12A.4 protein.
          Length = 338

 Score =  211 bits (515), Expect = 4e-55
 Identities = 104/201 (51%), Positives = 140/201 (69%), Gaps = 5/201 (2%)
 Frame = +2

Query: 140 PLFGKSQKSPAELVRSLKDAVTALER-----GDKKAEKAQEDVSKNLVLIKNMLYGTSDA 304
           PLFGK+ K+PA++V++L+DA+  ++R      ++K EKA E+ +K L L K  +YG+   
Sbjct: 4   PLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDAN 63

Query: 305 EPQTDIIVAQLAQEMYXXXXXXXXXXXXXRIDFEGKKDVAQVFNNVLRRQIGTRSPTVEY 484
           EP  +  V QLAQE+Y             + +FE KKDVA VFNN+LRRQIGTRSPTVEY
Sbjct: 64  EPNNEQ-VTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEY 122

Query: 485 ICTKPEILFTLRSGYEHQEIASNCGTMLRECARYEALAKIMLYSDDFYNFFRYVEVSTFD 664
           +  +PEIL TL  GYE  +IA  CG+MLRE  R+E LA+I+LYS+ F  FF +V+   FD
Sbjct: 123 LAARPEILITLLLGYEQPDIALTCGSMLREAVRHEHLARIVLYSEYFQRFFVFVQSDVFD 182

Query: 665 IASDAFSTFKELLTRHKILCA 727
           IA+DAFSTFK+L+T+HK +CA
Sbjct: 183 IATDAFSTFKDLMTKHKNMCA 203


>AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 416 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 517
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>AF039716-8|AAB96738.1|  384|Caenorhabditis elegans
           Paf-acetylhydrolase protein 1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 416 DVAQVFNNVLRRQIGTRSPTVEYICTKPEILFTL 517
           D   VF N L +Q G   PT  Y+C +  I  TL
Sbjct: 317 DFPFVFPNWLAKQFGVHGPTEPYLCMQSAIELTL 350


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 575 ILAASCHSWKLSLDVHTLTSV*IIFQAWYKCTLLLEIVFQFD 450
           +L A  H W L + +  L  + + F  WY+ T   E +F++D
Sbjct: 297 LLVAKHHDWALKIAIFLLQLIEMSFNVWYRIT---EELFKYD 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,862
Number of Sequences: 27780
Number of extensions: 310799
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)