Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d24
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.73 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.2  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   6.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +2

Query: 74   PKVQSYVDIITYITCPSRLNTMPLFGKSQKSPA--ELVRS---LKDAVTALERGDKKAEK 238
            PK+   VDI     C  +   + + GK ++SP   ELV +   +KD V  ++RG+K    
Sbjct: 1265 PKMDFNVDIRYGKNC-GKGERIDMNGKLRQSPRLKELVGATSIIKDCVEDMKRGNKILRT 1323

Query: 239  AQEDVSKNLVL 271
             Q+ V  +++L
Sbjct: 1324 CQKAVVLSMLL 1334


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 653 KLLHNGRNYKNHLNTTLF 600
           K +HN  NY N+ N  L+
Sbjct: 310 KTIHNNNNYNNYNNKKLY 327


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 16  HHSCSIRVNCRDIENYNNLSKSTILCRHNYLYHLPKSP 129
           H++ + + N  +  NYNN + +  L   NY+ ++ + P
Sbjct: 91  HNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIP 128


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 272 IKNMLYGTSDAEPQTDIIVAQLAQ 343
           IKNM+ GTS A+    I+ A + +
Sbjct: 99  IKNMITGTSQADCAVLIVAAGIGE 122


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 653 KLLHNGRNYKNH 618
           K +HN  NYKN+
Sbjct: 321 KTIHNNNNYKNY 332


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 316 CLWFCIRCTIKHIFNQYQILAH 251
           C W C  CT      QYQI  H
Sbjct: 605 CCWHCFNCT------QYQIRDH 620


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 272 IKNMLYGTSDAEPQTDIIVA 331
           IKNM+ GTS A+    I+ A
Sbjct: 26  IKNMITGTSQADCAVLIVAA 45


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 272 IKNMLYGTSDAEPQTDIIVA 331
           IKNM+ GTS A+    I+ A
Sbjct: 42  IKNMITGTSQADCAVLIVAA 61


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 272 IKNMLYGTSDAEPQTDIIVA 331
           IKNM+ GTS A+    I+ A
Sbjct: 99  IKNMITGTSQADCAVLIVAA 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,361
Number of Sequences: 438
Number of extensions: 4174
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)