Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d19
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.3  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   3.0  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   5.2  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   9.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   9.1  

>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 256 NQVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQ 387
           + V G+D L  D++  +      D  +LFTK +  + ++  DIQ
Sbjct: 212 DSVDGEDTLTADEKRKLAQESKEDRMMLFTKKMIEIRNILQDIQ 255


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 71   GRVGGHSLWLQH 36
            GR+GGH +W+ H
Sbjct: 1268 GRLGGHDIWISH 1279


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 256 NQVVGDDALVDDDESVVKSSQDIDTTILF 342
           N +V DDA  DD+  +  SS  ++T  LF
Sbjct: 44  NSLVVDDATNDDNSVITLSSNTMETLQLF 72


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 280 LVDDDESVVKSSQDIDTTILFT 345
           + D +ES     QDIDT++L+T
Sbjct: 30  IYDFEESSSYKGQDIDTSVLYT 51


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 280 LVDDDESVVKSSQDIDTTILFT 345
           + D +ES     QDIDT++L+T
Sbjct: 30  IYDFEESSSYKGQDIDTSVLYT 51


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 271 DDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTF 378
           D  L +D  +   S   +DT  L   PVP + DL F
Sbjct: 787 DQLLAEDSSTDDVSLPHLDTIDLDGSPVPKVPDLNF 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,383
Number of Sequences: 5004
Number of extensions: 32812
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)