Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d19
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    57   7e-09
AF039051-6|AAB94266.2|  448|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 26/77 (33%), Positives = 44/77 (57%)
 Frame = +1

Query: 286 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVXESMEA 465
           +DD+  + +S D      F +P  S  ++  +   G PV++ +GF NKG  D+V +  E 
Sbjct: 37  EDDDLTIGASPDAGLAFHFVQP--SDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAET 94

Query: 466 SFRYPMDYTYYIQXLHR 516
           SFR+P D++Y++Q   R
Sbjct: 95  SFRFPTDHSYHLQNFTR 111


>AF039051-6|AAB94266.2|  448|Caenorhabditis elegans Hypothetical
           protein C14C6.8 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 91  KNHAAATDELVDIHFGSSTRQLETWSKSKC 2
           +N A  TDE++   F +++R  E W + KC
Sbjct: 302 ENDAQLTDEMLFCKFRNTSRLGELWDQPKC 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,996
Number of Sequences: 27780
Number of extensions: 188644
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)