Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21d14
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 50 2e-07
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 35 0.010
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 34 0.023
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 33 0.030
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 29 0.85
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.4
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 27 3.4
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 26 4.5
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 26 6.0
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 6.0
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 7.9
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +3
Query: 3 DIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQIKLN 140
+IPYFETSAKEA+NV+ AF+T+A+ AL ++ +F D I L+
Sbjct: 150 EIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHLD 195
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQ 128
+ + E SAK VNV+ AF T+AR Q+ +AE NEF +Q
Sbjct: 146 VKFLEASAKTNVNVDEAFFTLAREIKKQKIDAE--NEFSNQ 184
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 33.9 bits (74), Expect = 0.023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 3 DIPYFETSAKEAVNVELAFQTIAR 74
+IP+ ETSAK++ NVE AF T++R
Sbjct: 144 NIPFLETSAKDSTNVEQAFLTMSR 167
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 33.5 bits (73), Expect = 0.030
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 12 YFETSAKEAVNVELAFQTIARNALAQETEA-ELYNEFPDQIKLN 140
+FE SAKE NV F+T++R AL E+ + N+F + + L+
Sbjct: 154 HFEASAKENTNVTDLFETVSRLALENESSRDDFVNDFSEPLLLS 197
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 3 DIPYFETSAKEAVNVELAFQTI 68
++ + ETSA +A NVE AFQT+
Sbjct: 146 NLSFIETSAMDASNVEEAFQTV 167
>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 60 QTIARNALAQETEAELYNEFPDQIKLN 140
+T+ + AQET A+LY E D + N
Sbjct: 3 ETVNKILRAQETRAQLYKELEDALNAN 29
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 405 VYRLPEQNKKLPVHHFDNIIRCMIKNSN*NVLIDSI--HFYMIHKTQ 271
V+ +PE NK++ I+ + K+ N ++L+D+ F++ +TQ
Sbjct: 190 VFPVPENNKEIEHEVVSEILELIEKSKNPSILVDACVSRFHIQQETQ 236
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 12 YFETSAKEAVNVELAFQTIAR 74
Y ETSAK +NVE AF ++ R
Sbjct: 147 YVETSAKLRLNVEEAFYSLVR 167
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 12 YFETSAKEAVNVELAFQTIAR 74
+FETSAK A NV F IA+
Sbjct: 155 FFETSAKTAENVNELFTAIAK 175
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 277 NTSYLVLHYVFMDIKTRNIL 218
N Y++L Y F DIK +IL
Sbjct: 226 NLKYIILDYSFRDIKNNSIL 245
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 441 VFKSTSILIFLHVYRLPEQNKKLPV 367
++ ST +L+ L +R+P Q K +PV
Sbjct: 626 IYDSTGVLLVLMHWRIPGQAKWIPV 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,721
Number of Sequences: 5004
Number of extensions: 48166
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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