Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21d14
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0893 + 7043130-7043182,7043309-7043335,7043461-7043560,704... 55 6e-08
05_06_0080 + 25420371-25420423,25420681-25420780,25421742-254218... 49 3e-06
05_06_0217 + 26457847-26457902,26458336-26458435,26458551-264586... 42 6e-04
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 35 0.072
05_03_0286 - 11623575-11624063,11625098-11625262 32 0.51
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 32 0.51
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 32 0.51
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 32 0.51
07_01_0926 - 7775536-7775616,7775695-7775787,7775903-7775965,777... 31 0.67
05_05_0118 - 22504483-22504566,22504650-22504742,22504852-225049... 31 0.89
07_01_0685 - 5177340-5177363,5177770-5177865,5177991-5178053,517... 31 1.2
03_06_0475 + 34193951-34194023,34195414-34195486,34195572-341956... 31 1.2
05_01_0037 - 256891-256998,257347-257502,257753-257824,258737-25... 30 1.5
05_01_0036 + 253734-253904,255216-255707 29 2.7
01_06_1343 - 36461476-36461961,36463355-36463519 29 2.7
10_06_0181 - 11532765-11533203,11536867-11537036 28 6.2
>01_01_0893 +
7043130-7043182,7043309-7043335,7043461-7043560,
7045110-7045256,7045342-7045422,7045509-7045654,
7046030-7046099
Length = 207
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/43 (62%), Positives = 31/43 (72%)
Frame = +3
Query: 3 DIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQI 131
+IPYFETSAKE NVE AF+ IARNA+ E E E+Y PD I
Sbjct: 151 NIPYFETSAKEGFNVEAAFECIARNAIKNEPEEEIY--LPDTI 191
>05_06_0080 +
25420371-25420423,25420681-25420780,25421742-25421888,
25421959-25422039,25422147-25422296
Length = 176
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +3
Query: 3 DIPYFETSAKEAVNVELAFQTIARNALAQETEAEL 107
+IPYFETSAK+ NVE AFQ I +NAL E E EL
Sbjct: 142 NIPYFETSAKDGTNVEEAFQCIVKNALKNEPEEEL 176
>05_06_0217 +
26457847-26457902,26458336-26458435,26458551-26458697,
26459040-26459120,26459251-26459396,26459509-26459572
Length = 197
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +3
Query: 3 DIPYFETSAKEAVNVELAFQTIARNALAQETEAELY 110
+IPYFETSAK+ NV+ AF IA+ AL E + ++Y
Sbjct: 143 NIPYFETSAKDDYNVDSAFLCIAKLALEHEHDQDIY 178
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 34.7 bits (76), Expect = 0.072
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIA 71
IP+ ETSAK+A NVE AF T+A
Sbjct: 145 IPFLETSAKDATNVEKAFMTMA 166
>05_03_0286 - 11623575-11624063,11625098-11625262
Length = 217
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 12 YFETSAKEAVNVELAFQTI 68
+ ETSA EAVNVE AFQTI
Sbjct: 151 FLETSAMEAVNVEEAFQTI 169
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARN 77
+ + ETSA EA+NVE AFQTI ++
Sbjct: 180 LSFLETSALEALNVEKAFQTILKD 203
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIA 71
IP+ ETSAK A NVE AF +A
Sbjct: 161 IPFMETSAKNATNVEQAFMAMA 182
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIA 71
IP+ ETSAK A NVE AF +A
Sbjct: 145 IPFMETSAKNATNVEQAFMAMA 166
>07_01_0926 -
7775536-7775616,7775695-7775787,7775903-7775965,
7776326-7776423,7776661-7776761,7776865-7776937,
7778575-7778647
Length = 193
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQIKLN 140
I +FETSAK +NVE F +IAR+ + E + E IK+N
Sbjct: 131 IKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSKTE-DRTIKIN 174
>05_05_0118 -
22504483-22504566,22504650-22504742,22504852-22504914,
22505048-22505145,22505378-22505478,22505581-22505653,
22505872-22505910,22506946-22507018
Length = 207
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQIKLN 140
I +FETSAK +NVE F +IAR+ + E + E IK+N
Sbjct: 144 IKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSKPE-DKTIKIN 187
>07_01_0685 -
5177340-5177363,5177770-5177865,5177991-5178053,
5178138-5178232,5178941-5179028,5179372-5179444,
5179866-5179920,5180355-5180463
Length = 200
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 12 YFETSAKEAVNVELAFQTIARNALAQETE 98
+FETSAK NVE F TIAR+ + TE
Sbjct: 158 FFETSAKTNQNVEQVFFTIARDIKQRLTE 186
>03_06_0475 +
34193951-34194023,34195414-34195486,34195572-34195672,
34195912-34196009,34196326-34196388,34196534-34196626,
34196697-34196774
Length = 192
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAE 104
I +FETSAK +NVE F +IAR+ + +E +
Sbjct: 131 IKFFETSAKTNLNVEQVFFSIARDIKQRLSETD 163
>05_01_0037 -
256891-256998,257347-257502,257753-257824,258737-258784,
259071-259143,259237-259250
Length = 156
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIA 71
I + ETSAKE++NVE AF T++
Sbjct: 129 ISFLETSAKESINVEEAFLTMS 150
>05_01_0036 + 253734-253904,255216-255707
Length = 220
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTI 68
+ Y ETSA EA NVE AFQ I
Sbjct: 151 LSYIETSALEATNVEEAFQLI 171
>01_06_1343 - 36461476-36461961,36463355-36463519
Length = 216
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTI 68
+ + ETSA EA+NVE AF T+
Sbjct: 149 LSFLETSALEAINVEKAFHTV 169
>10_06_0181 - 11532765-11533203,11536867-11537036
Length = 202
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 12 YFETSAKEAVNVELAFQTI 68
+ ETSA +A NVE AFQT+
Sbjct: 135 FLETSALQATNVENAFQTV 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,277,128
Number of Sequences: 37544
Number of extensions: 241341
Number of successful extensions: 395
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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