Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21d14
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 61 9e-10
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 32 0.46
AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical... 29 4.3
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 28 5.6
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 28 5.6
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 28 7.4
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 28 7.4
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 28 7.4
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 28 7.4
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 28 7.4
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/47 (63%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = +3
Query: 3 DIPYFETSAKEAVNVELAFQTIARNALAQET-EAELYNEFPDQIKLN 140
+IPY+E SAKEA+NVE AF IAR+ALA+E+ E + EFPDQI+LN
Sbjct: 150 NIPYYEVSAKEALNVEAAFLAIARDALARESQETNDFPEFPDQIRLN 196
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIA 71
IP+ ETSAK + NVE AF T+A
Sbjct: 148 IPFLETSAKSSTNVEQAFLTMA 169
>AL132949-24|CAB61102.1| 860|Caenorhabditis elegans Hypothetical
protein Y53F4B.28 protein.
Length = 860
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 507 IKFKCTISVCVSILFICQH*LYDAKF--VVLDSKTLITLNLSIGISHFYS 650
+ F+ ISV VSI+ IC + V LD+ +LI++ +SIG S YS
Sbjct: 695 MNFEAIISVAVSIVSICLGIVVYLHLWNVNLDAVSLISMLMSIGFSVDYS 744
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNAL 83
IP+ ETSAK NV+ AF +A L
Sbjct: 138 IPFMETSAKTGFNVDRAFLGLAERML 163
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNAL 83
IP+ ETSAK NV+ AF +A L
Sbjct: 138 IPFMETSAKTGFNVDRAFLGLAERML 163
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQ 128
+ +FETSAKE +NV+ F+ + + + AE ++ P Q
Sbjct: 159 LEFFETSAKENINVKAVFEKLVE--IICDKMAESLDKDPQQ 197
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQ 128
+ +FETSAKE +NV+ F+ + + + AE ++ P Q
Sbjct: 159 LEFFETSAKENINVKAVFEKLVE--IICDKMAESLDKDPQQ 197
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQ 128
+ +FETSAKE +NV+ F+ + + + AE ++ P Q
Sbjct: 159 LEFFETSAKENINVKAVFEKLVE--IICDKMAESLDKDPQQ 197
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQ 128
+ +FETSAKE +NV+ F+ + + + AE ++ P Q
Sbjct: 173 LEFFETSAKENINVKAVFEKLVE--IICDKMAESLDKDPQQ 211
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 6 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQ 128
+ +FETSAKE +NV+ F+ + + + AE ++ P Q
Sbjct: 159 LEFFETSAKENINVKAVFEKLVE--IICDKMAESLDKDPQQ 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,478
Number of Sequences: 27780
Number of extensions: 270374
Number of successful extensions: 597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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