Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21d12
(586 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95123-1|CAD59158.1| 83|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z73423-2|CAA97774.1| 290|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical ... 29 3.2
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 28 4.2
U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protei... 27 9.8
U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protei... 27 9.8
U53150-1|AAA96123.2| 302|Caenorhabditis elegans Serpentine rece... 27 9.8
AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E prot... 27 9.8
AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E prot... 27 9.8
>Z95123-1|CAD59158.1| 83|Caenorhabditis elegans Hypothetical
protein VZK822L.2 protein.
Length = 83
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 295 VLMASLNSACISLRVKQSELHPPKCVQFLGGIVVVYL 185
+L+ ++ CI + + QS L PP+C G +++ L
Sbjct: 13 LLVGGMSIVCILIHIIQSTLRPPQCCHNSSGTLIIGL 49
>Z73423-2|CAA97774.1| 290|Caenorhabditis elegans Hypothetical
protein C03A3.3 protein.
Length = 290
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 56 YMNDKQLITYDYSNYIEFFSFVRSIKKRFDNRQLQDFFYATLKKIDNNDAP 208
Y D + TY Y++ ++ + VRSI K ++ ++ + A+ DNN P
Sbjct: 178 YRFDDIMFTYQYTDIRQYENSVRSILKFVKSQDVEVRYSASKNDTDNNCLP 228
>AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical
protein Y52D5A.1 protein.
Length = 914
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/127 (19%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Frame = -1
Query: 385 LALIYSFIRSNDTMSNM------CAQTSSVFIVCLSVLMASLNSACISLRVKQSELHPPK 224
L +IY F++ N+++ ++ +S+F + + + ++++ L V L K
Sbjct: 40 LPVIYIFLKMNNSIFDLPVIYIFLKMNNSIFDLPVIYIFLKMSNSIFKLPVIYIFL---K 96
Query: 223 CVQFLGGIVVVYLF*SGVEKVLQLPIIETLLDAAHKTKKFNVIAVIVR--DQLFVVHIIK 50
+ + V+Y+F + LP+I L ++ K VI + ++ + +F + +I
Sbjct: 97 MSNSIFDLPVIYIFLKMSNSIFDLPVIYIFLKMSNSIFKLPVIYIFLKMSNSIFDLPVIY 156
Query: 49 IFVERHD 29
IF++ ++
Sbjct: 157 IFLKMNN 163
Score = 27.1 bits (57), Expect = 9.8
Identities = 24/124 (19%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Frame = -1
Query: 385 LALIYSFIRSNDTMSNM------CAQTSSVFIVCLSVLMASLNSACISLRVKQSELHPPK 224
L +IY F++ ++++ ++ ++S+F + + + +N++ L V L K
Sbjct: 490 LPVIYIFLKMSNSIFDLPVIYIFLKMSNSIFKLPVIYIFLKMNNSIFDLPVIYIFL---K 546
Query: 223 CVQFLGGIVVVYLF*SGVEKVLQLPIIETLLDAAHKTKKFNVIAVIVR--DQLFVVHIIK 50
+ + V+Y+F + LP+I L+ ++ VI + ++ + +F + +I
Sbjct: 547 MSNSIFDLPVIYIFLKMNNSIFDLPVIYIFLEMSNSIFDLPVIYIFLKMSNSIFDLPVIY 606
Query: 49 IFVE 38
IF++
Sbjct: 607 IFLK 610
>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
protein F27D4.6 protein.
Length = 1008
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 29 IVPLNKYFNYMNDKQLITYDY-SNYIEFFS 115
I+P +KY NY+ K +DY N E FS
Sbjct: 498 IIPASKYNNYLQGKYAFEFDYKENRSEVFS 527
>U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protein
1, isoform b protein.
Length = 521
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 280 LNSACISLRVKQSELHPPKCVQF 212
+ +A + + K E++PPKC+ F
Sbjct: 306 VGTAALFIAAKYEEIYPPKCIDF 328
>U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protein
1, isoform a protein.
Length = 524
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 280 LNSACISLRVKQSELHPPKCVQF 212
+ +A + + K E++PPKC+ F
Sbjct: 309 VGTAALFIAAKYEEIYPPKCIDF 331
>U53150-1|AAA96123.2| 302|Caenorhabditis elegans Serpentine
receptor, class sx protein32 protein.
Length = 302
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 319 SVFIVCLSVLMASLNSACISLRVKQSELHPP 227
++F +C S++ + NS I L +K+ H P
Sbjct: 13 AIFYLCCSIVSCTGNSIMIILFIKEKNFHSP 43
>AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 280 LNSACISLRVKQSELHPPKCVQF 212
+ +A + + K E++PPKC+ F
Sbjct: 309 VGTAALFIAAKYEEIYPPKCIDF 331
>AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 280 LNSACISLRVKQSELHPPKCVQF 212
+ +A + + K E++PPKC+ F
Sbjct: 309 VGTAALFIAAKYEEIYPPKCIDF 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,105
Number of Sequences: 27780
Number of extensions: 297854
Number of successful extensions: 810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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