Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d12
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 248 LDPKRNTSAVQGSHQHAQAHNEY 316
           + P++     Q   QH QAH ++
Sbjct: 179 MQPQQGQHQSQAQQQHLQAHEQH 201


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 246 SPNYTRLSACNFWGASLLSIFFRVA 172
           +PN ++LS    W  ++  IFF  A
Sbjct: 268 TPNLSKLSDPEVWIDAVTQIFFSYA 292


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 246 SPNYTRLSACNFWGASLLSIFFRVA 172
           +PN ++LS    W  ++  IFF  A
Sbjct: 321 TPNLSKLSDPEVWIDAVTQIFFSYA 345


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -2

Query: 564 VEDCCSGMFTMFDFCKPLKRPACILDDIFF 475
           V   CS  F       P K P  +L D+ F
Sbjct: 49  VLSACSPYFRELLKSTPCKHPVIVLQDVAF 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,928
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)