Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d10
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    77   1e-15
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    76   4e-15
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    30   0.18 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.18 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   1.6  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    27   2.2  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   5.0  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   5.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   5.0  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.0  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   6.7  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   6.7  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   8.8  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 35/52 (67%), Positives = 42/52 (80%)
 Frame = +2

Query: 59  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVK 214
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+K
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53



 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +1

Query: 382 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDAEALKKL 513
           S T++L  +PRP M +C+LGD    D AK   V  M  + LKKL
Sbjct: 49  SGTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKL 92


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 75.8 bits (178), Expect = 4e-15
 Identities = 35/52 (67%), Positives = 43/52 (82%)
 Frame = +2

Query: 59  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVK 214
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+K
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53



 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +1

Query: 382 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDAEALKKL 513
           S T++L  +PRP M +C+LGD    D AK   V  M  + LKKL
Sbjct: 49  SGTIKLPNVPRPNMAICILGDAHDLDRAKHGGVDAMSVDDLKKL 92


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 53  MSSKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTV 211
           +SSK+ +D L   V  +L     KK +N+L  + L +   N  P  +K ++ TV
Sbjct: 73  ISSKIPQDKLKSTVENLLSGVAGKKSKNYLSALSLLLSNSNVQPFVNKFYTSTV 126


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +2

Query: 41   LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 205
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = -3

Query: 322  GQVPSVCTDSLYRFILVEF**KINNIPLKCSFQVNVLYSA--GETLVLLWVIVLQTNLKL 149
            G +P+     L+R +++ F   + N     S  ++  +    G  L  LW IV+ T   L
Sbjct: 1142 GSIPAFSKSLLHRKVVICFLISVINQNFWMSTLISQAWRFFWGSKLTKLWKIVVMTVSFL 1201

Query: 148  YSLQKVTFLVLRGLKN 101
                 + F VLR L N
Sbjct: 1202 VGAWLIIFYVLRKLSN 1217


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 233 LLSGKRTLQCRRNAC 189
           LLSG+ +L CR NAC
Sbjct: 153 LLSGQHSLSCRMNAC 167


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -1

Query: 366 NNRLAQATCPLFRLWVKSRQYAPTPCTDSFWWNFN 262
           ++++ + +C  F  W+K+  +A     D  W+  N
Sbjct: 81  HSKVGKKSCKRFMRWLKANAFAEERDIDCIWYQLN 115


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +2

Query: 131 NFLETVELQIGLKNYDPQKDKRFSGTVKYVYLKGAF*WNVIYFLLKFHQNESVQGV 298
           NFL  + +   L  Y+ +         +Y Y +    +  I+F L F  N S  G+
Sbjct: 384 NFLTFLHIYPQLSIYNLELQLGIEKEYQYPYFESIMWYTAIHFYLAFPDNSSRDGI 439


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 148
           K   K   DT+ E   A LQSS DK  NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 92  VNAVLQSSKDKKRNFLETV 148
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 244 PLKCSFQVNVLYSAGETLVLLWVIVLQTNLKLYSLQKVTF--LVLRGLKNGIHALV 83
           P+KCS QVN  YS      ++  +++  ++  Y  QK+    L+L    N + +LV
Sbjct: 121 PIKCSNQVNTQYSVSFLFTIMASVLI--SVLNYISQKIFLNGLILGNSHNVVTSLV 174


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -1

Query: 168 FRPI*SSTVSKKLRFLSLED*RTAFTHS*SVSRDTLDDILFVREPPITTLGSCK 7
           F  +  S    K   ++ E+ + +F  + SV++D+  D   +++ P+T + SC+
Sbjct: 96  FNVVKESNDKPKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCR 149


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 71  RDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRF 199
           ++ L++ V      SK+  +    T+E Q+   N+D QK   F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 460 RHNAAGLQERKLAFSAAVCILASPCSFTFNPK*SVGSSHLPI 335
           R N  G  + +L+  A  C+L SPC     PK   G   L I
Sbjct: 189 RSNPKGRADGELSIFARQCVLLSPC-LRMLPKEHYGLKDLEI 229


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 368 KIIGWLKPPAHYLDSGSSPVSMHRLPVQIHSGGIL 264
           K +GWLKP   YL S   PV      V   S G+L
Sbjct: 469 KKMGWLKPNQPYLLSIQDPVDFQN-DVSKSSRGLL 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,524
Number of Sequences: 5004
Number of extensions: 46251
Number of successful extensions: 117
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)