Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21d10
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 76 2e-14
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 76 2e-14
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 73 1e-13
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 73 2e-13
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 2.9
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 5.1
01_05_0208 - 19291953-19292552,19293027-19293134,19293231-192933... 27 8.8
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 75.8 bits (178), Expect = 2e-14
Identities = 32/56 (57%), Positives = 44/56 (78%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKYVYL 226
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VK ++
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHI 57
Score = 57.2 bits (132), Expect = 7e-09
Identities = 24/44 (54%), Positives = 35/44 (79%)
Frame = +1
Query: 382 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDAEALKKL 513
S +V+L +IPRPK++VC+LGD QH +EA+ + + MD EALKK+
Sbjct: 49 SGSVKLPHIPRPKLKVCMLGDAQHVEEAEKMGLDYMDVEALKKM 92
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 75.8 bits (178), Expect = 2e-14
Identities = 32/56 (57%), Positives = 44/56 (78%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKYVYL 226
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VK ++
Sbjct: 2 SKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHI 57
Score = 58.4 bits (135), Expect = 3e-09
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +1
Query: 382 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDAEALKKL 513
S +V+L +IPRPKM+VC+LGD QH +EA+ + + MD EALKK+
Sbjct: 49 SGSVKLPHIPRPKMKVCMLGDAQHVEEAEKMGLDYMDVEALKKM 92
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = +2
Query: 59 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKYVYL 226
SK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VK ++
Sbjct: 2 SKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHI 57
Score = 58.4 bits (135), Expect = 3e-09
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +1
Query: 382 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDAEALKKL 513
S +V+L +IPRPKM+VC+LGD QH +EA+ + + MD EALKK+
Sbjct: 49 SGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKM 92
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +2
Query: 62 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKYVYL 226
K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VK ++
Sbjct: 21 KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHI 75
Score = 58.4 bits (135), Expect = 3e-09
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +1
Query: 382 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDAEALKKL 513
S +V+L +IPRPKM+VC+LGD QH +EA+ + + MD EALKK+
Sbjct: 67 SGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKM 110
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 209 QCRRNACPSVGHSSSDQFEALQSPKS 132
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 110 SSKDKKRNFLETVELQIGLKNYDPQK 187
S+ +KKRNF ETVE + L DP++
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRR 303
>01_05_0208 -
19291953-19292552,19293027-19293134,19293231-19293344,
19293464-19293573,19293720-19293808,19293942-19294138,
19294241-19294402,19294501-19294619,19294739-19294826,
19294911-19295016,19295157-19295245,19295351-19295503,
19295631-19295723,19295823-19295889,19296217-19296329,
19296453-19296548,19297963-19298139
Length = 826
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 128 RNFLETVELQIGLKNYDPQKDKRFSGTV 211
+N++ + +GLKNY P +K +G V
Sbjct: 540 KNYISLLSATVGLKNYGPSFEKMPTGIV 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,431
Number of Sequences: 37544
Number of extensions: 301748
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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