Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d03
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...   190   8e-51
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.6  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   4.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score =  190 bits (463), Expect = 8e-51
 Identities = 82/103 (79%), Positives = 95/103 (92%)
 Frame = +2

Query: 284 EDETIGPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLP 463
           ED+T GP+F++EPPNR+DFSNTTGA VEC+A G+PTPDIIWVR+DGT VGDVPGLRQVL 
Sbjct: 17  EDDTSGPVFVREPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLA 76

Query: 464 NGNLLFPPFRAKDYRQEVHAQVYACLARNPVGTILSRDVNVRA 592
           NGNL+FPPFRA+DYRQEVHAQVY CLA+N VG++ SRDVNVRA
Sbjct: 77  NGNLVFPPFRAEDYRQEVHAQVYVCLAKNSVGSVHSRDVNVRA 119



 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 46/97 (47%)
 Frame = +2

Query: 296 IGPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNL 475
           + P ++ EP ++  F+  + A VEC A G P P + W RA G + GD    +   P+  +
Sbjct: 697 VPPRWILEPTDKA-FAQGSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKV 755

Query: 476 LFPPFRAKDYRQEVHAQVYACLARNPVGTILSRDVNV 586
                   +  Q+ +   Y C A N +G+ LS  + +
Sbjct: 756 EDGTLTINNI-QKTNEGYYLCEAVNGIGSGLSAVIQI 791



 Score = 26.2 bits (55), Expect = 0.21
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 362 VECAARGSPTPDIIW 406
           ++C A G+PTP+I W
Sbjct: 433 LKCIASGNPTPEITW 447



 Score = 24.2 bits (50), Expect = 0.84
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +2

Query: 368 CAARGSPTPDIIWVR-ADGTTVGDVPGLRQVLPN--GNLLFPPFRAKDYRQEVHAQVYAC 538
           C A+G P+P   W +  +GTT      L   +    G L+    + +D      +  Y C
Sbjct: 254 CPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQVAGTLIIREAKVED------SGKYLC 307

Query: 539 LARNPVG 559
           +  N VG
Sbjct: 308 VVNNSVG 314



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 359  TVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNLLFPPFRAKDYRQEVHAQVYAC 538
            T+ C A G P P I W +  G        +RQ  P+G+L       +D  +  +A  Y+C
Sbjct: 1325 TLPCLAVGLPPPVITW-KIKGVQFTTSDKIRQ-QPDGSLFI-----RDVSRN-NAGEYSC 1376

Query: 539  LARNPVG 559
               N  G
Sbjct: 1377 HVENDYG 1383


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 550 VACETSIDLSVYFLAVIFGTEWREQQVS 467
           V+  TS+  SVY LA++F   + E+ V+
Sbjct: 299 VSISTSVSTSVY-LAIVFNGLFTEEDVA 325


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 167 KSLRQKSRIGRNAAGLCPNLRRISDGFAQHPQHINHNTRGETSGNNR 27
           K+  Q   + R  A     ++++++GFA   QHI +        N+R
Sbjct: 46  KTAPQPVAVARRNARERNRVKQVNNGFANLRQHIPNFIAAAFESNSR 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,247
Number of Sequences: 336
Number of extensions: 3487
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)