Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d03
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    29   0.51 
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    27   2.7  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   3.6  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    26   4.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   8.3  

>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 191 FTYKLQIRKSLRQKSRIGRNAAGLCPNLRRISDGFAQHPQHINHNTRGETSGN 33
           ++YK  +  + ++K R+     G C N R   D F  H +   H    E + N
Sbjct: 476 YSYKAMLHNTSQRKIRVDAKP-GYCENCREKFDNFESHIRSSRHRRFAENNDN 527


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 335 DFSNTTGATVECAARGSPTPDIIWV 409
           D+ +    TVE + R SP PD +W+
Sbjct: 580 DYGSDKLPTVEESLRNSPKPDTLWI 604


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 379 WFSDPRHHLGAS*WYYRRR-CPWIASGLAKWK 471
           W SD R     S WYY  + C W +  +  +K
Sbjct: 121 WLSDIRRGYCTSHWYYNEKFCCWYSETMGMFK 152


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = -2

Query: 526 LSVYFLAVIFGTEWREQQVSIWQDLTQSRDISYGSTISSHPDDVGGRRTTGSTFNSRTGR 347
           +SV    V   T+  E+    W  + +           SH   V   R+   +FNS  G 
Sbjct: 56  VSVQMPLVTSKTKESEKSPKSWSAIAKKHVQGDSPVKKSHSVPVPSDRSEKKSFNSSLGE 115

Query: 346 IAEVYS 329
           + E YS
Sbjct: 116 LIETYS 121


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 538 TSIDLSVYFLAVIFGTEWREQQVSIWQDL 452
           T +D SV F AVI   +  E Q +I +DL
Sbjct: 88  TELDASVLFEAVIMSLKATEDQCAIQEDL 116


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = -3

Query: 513 SWR*SLARNGGNNKFPFGKT*RNPGTSPTVVPSARTQMMSGVGEPRAAHSTVAPVVLLKS 334
           S R +L+ N    K P     +  G   ++VP  R + ++   +     S  +PV LL  
Sbjct: 270 SIRHNLSLNKAFRKVPRKSGEQGKGMKWSIVPEFREEFIAKTRKTPRKRSPSSPVPLLAK 329

Query: 333 TRFGGSFINIGPMVSSSHSTDPKAASAT 250
            R G   + I  +     ++ P A  A+
Sbjct: 330 KREGSPSLPIPILPKMKDTSIPAAEPAS 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,247
Number of Sequences: 5004
Number of extensions: 53559
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)