Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21d03
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0141 - 11151344-11151531,11151926-11152275,11153119-111532... 31 0.69
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 31 0.92
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 29 2.8
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 29 2.8
08_02_1506 - 27585894-27586467,27586923-27587551,27591026-27591391 29 2.8
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 28 6.5
01_01_0217 + 1848970-1849251,1849419-1849566,1849638-1849789,185... 28 6.5
12_02_1218 - 27088206-27088214,27088577-27088643,27088755-270888... 27 8.5
11_06_0087 - 19919224-19922304 27 8.5
07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823 27 8.5
>10_06_0141 -
11151344-11151531,11151926-11152275,11153119-11153274,
11153505-11153674,11155431-11155589,11157139-11157447,
11157550-11157750
Length = 510
Score = 31.1 bits (67), Expect = 0.69
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 338 FSNTTGATVECAARGSPTPDIIWVRADGTTVGD---VPGLRQVLPNGNLL 478
FS + G TV A RG+P+P I V G V + +P L +PN +LL
Sbjct: 18 FSVSDGRTVRPAKRGAPSPPIRAVNLGGWLVTEGWILPSLFDDIPNKDLL 67
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 454 LTQSRDISYGSTISSHPDDVGGRRTTGSTFNSRTGRIAEVY--SIRGFLHK 308
L QS D+ S+ S HP VG R+++ + R +AE+ SIR H+
Sbjct: 374 LLQSDDLDGNSSRSKHPSTVGKRKSSQYKMDERLPIMAEIQEKSIRSTAHR 424
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 282 HSTDPKAASATRAVKIVVAISLARHFTIHLI 190
HST PK R VKI +L + T+H++
Sbjct: 1696 HSTAPKVVDVIRLVKIAQITALLLYVTVHML 1726
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 282 HSTDPKAASATRAVKIVVAISLARHFTIHLI 190
HST PK R VKI +L + T+H++
Sbjct: 1692 HSTAPKVVDVIRLVKIAQITALLLYVTVHML 1722
>08_02_1506 - 27585894-27586467,27586923-27587551,27591026-27591391
Length = 522
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = -3
Query: 417 SARTQMMSGVGEPRAAHSTVAPVVLLKSTRFGGSF----INIGPMVSSSHSTDPKAASAT 250
S R G G PRAA +A VVL+ S G +F + + + + + P+ A
Sbjct: 351 SVRVSNELGAGRPRAARLAIA-VVLVSSVAIGVAFFAAVLLLRDVYGAPFTGSPEVVRAV 409
Query: 249 RAVKIVVAISL 217
++ +V A SL
Sbjct: 410 ASLGVVFAFSL 420
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = -2
Query: 436 ISYGSTISSHPDDVGGRRTTGS 371
+SYG+++S+HP + GG +++ S
Sbjct: 459 LSYGASLSAHPYNAGGGKSSSS 480
>01_01_0217 +
1848970-1849251,1849419-1849566,1849638-1849789,
1850146-1850328,1850690-1850765,1850956-1851033,
1851584-1851669,1852680-1852753,1852920-1852965,
1853211-1853320,1853600-1853774,1854501-1854749
Length = 552
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 475 VVPAIPCQRLPPGSTRSGLCLSRTQPCR 558
V PA+PCQ PPG + + QP R
Sbjct: 187 VAPALPCQEYPPGIKLVPMKSNTLQPFR 214
>12_02_1218 -
27088206-27088214,27088577-27088643,27088755-27088821,
27088934-27089054,27089272-27089351,27089574-27089686,
27090305-27090420,27090507-27090575,27090684-27090758,
27090836-27090880,27091100-27091187,27091488-27091570,
27091655-27091705,27091848-27091905,27092019-27092201,
27092385-27092546,27092713-27093029
Length = 567
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 515 LPGGNLWHGMAGTTSFHLARP 453
L GGN++HG G S L RP
Sbjct: 519 LTGGNIFHGAMGLDSLFLMRP 539
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = -2
Query: 592 RSDID--ITRQYSSYRVACETSIDLSVYFLAVIFGTEWR 482
R+D+D IT ++ + R+A T+IDLS+ L + G+EW+
Sbjct: 487 RNDLDGVITEEHFA-RLARLTTIDLSLNPLKIEVGSEWK 524
>07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823
Length = 224
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 53 ACCGLCVVGAVQTHR*FYADSGKARPHCGLF 145
AC G C+ G + H Y ++ KARP LF
Sbjct: 86 ACEGRCLSGPIWNHIVGYWNASKARPETVLF 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,222,583
Number of Sequences: 37544
Number of extensions: 420659
Number of successful extensions: 1211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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