Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21d03
(593 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 186 2e-49
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 120 8e-30
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 120 8e-30
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 29 0.026
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 24 0.98
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 1.7
AF213011-1|AAG43567.1| 62|Apis mellifera esterase A2 protein. 23 3.0
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 22 3.9
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 5.2
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 22 5.2
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 21 6.9
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 21 6.9
EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle pr... 21 9.1
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 186 bits (452), Expect = 2e-49
Identities = 81/99 (81%), Positives = 92/99 (92%)
Frame = +2
Query: 296 IGPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNL 475
+GP+F+KEPPNRVDFSN TGA VEC ARG+P PDIIWVRADG+ VGDVPGLRQVLPNGNL
Sbjct: 1 MGPVFVKEPPNRVDFSNGTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGNL 60
Query: 476 LFPPFRAKDYRQEVHAQVYACLARNPVGTILSRDVNVRA 592
+FPPFRA+DYRQEVHAQVY+CLAR+P G++ SRDVNVRA
Sbjct: 61 VFPPFRAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRA 99
Score = 44.4 bits (100), Expect = 9e-07
Identities = 28/92 (30%), Positives = 45/92 (48%)
Frame = +2
Query: 296 IGPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNL 475
+ P ++ EP ++ F+ + A VEC A G P P + W +A G T GD L+ P+ ++
Sbjct: 677 VPPRWILEPTDKA-FAQGSDARVECKADGFPKPQVTWKKAAGDTPGDYTDLKLSNPDISV 735
Query: 476 LFPPFRAKDYRQEVHAQVYACLARNPVGTILS 571
+ Q+ + Y C A N +G LS
Sbjct: 736 EDGTLSINNI-QKTNEGYYLCEAVNGIGAGLS 766
Score = 30.3 bits (65), Expect = 0.015
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 362 VECAARGSPTPDIIWVRADGTTVGDVPGL---RQVLPNGNLLFPPFRAKDYRQEVHAQVY 532
++C A G+PTP+I W DG + + L + V NG+++ + + + +Y
Sbjct: 413 LKCVASGNPTPEITW-ELDGKRLSNTERLQVGQYVTVNGDVVSHLNISSTHTND--GGLY 469
Query: 533 ACLARNPVGT 562
C+A + VG+
Sbjct: 470 KCIAASKVGS 479
Score = 28.3 bits (60), Expect = 0.060
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +2
Query: 368 CAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNLLFPPFRAKDYRQEVHAQVYACLAR 547
C A G P P++ W + G + LRQ LP G+L D A Y+C
Sbjct: 1298 CLAVGVPAPEVTW-KVRGAVLQSSDRLRQ-LPEGSLFIKEVDRTD------AGEYSCYVE 1349
Query: 548 NPVG 559
N G
Sbjct: 1350 NTFG 1353
Score = 25.4 bits (53), Expect = 0.42
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 317 EPPNR-VDFSNTTGATVECAARGSPTPDIIWVRADGTTVG 433
EP + +DF AT C RG+P + W++ DG +G
Sbjct: 313 EPSTQTIDFGRP--ATFTCNVRGNPIKTVSWLK-DGKPLG 349
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 120 bits (290), Expect = 8e-30
Identities = 55/98 (56%), Positives = 71/98 (72%)
Frame = +2
Query: 299 GPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNLL 478
GP F+ EPP+RV+FSN++GA ++C A GSP +I W ADG V DVPG+R+VL NG L+
Sbjct: 29 GPSFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTADGHPVNDVPGVRRVLRNGTLV 88
Query: 479 FPPFRAKDYRQEVHAQVYACLARNPVGTILSRDVNVRA 592
PF A +RQ+VH+ Y C+A N VG +LSRDV VRA
Sbjct: 89 LLPFPAAAFRQDVHSAAYRCVASNSVGRVLSRDVQVRA 126
Score = 44.4 bits (100), Expect = 9e-07
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +2
Query: 296 IGPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQ-----VL 460
+ P ++ EP + V + C A+G PTP I+W +A G+ G+ LR+ +L
Sbjct: 708 VPPRWIVEPTD-VSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKIL 766
Query: 461 PNGNLLFPPFRAKDYRQEVHAQVYACLARNPVGTILSRDVNVR 589
NG LL + +E Y C A N +G+ + + V ++
Sbjct: 767 SNGTLLL------QHVKEDREGFYLCQASNGIGSGIGKVVQLK 803
Score = 26.2 bits (55), Expect = 0.24
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 359 TVECAARGSPTPDIIW 406
+++C+A G+PTP + W
Sbjct: 440 SLKCSAAGNPTPQVTW 455
Score = 25.0 bits (52), Expect = 0.56
Identities = 22/86 (25%), Positives = 31/86 (36%)
Frame = +2
Query: 302 PIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNLLF 481
P + E V + ++ C A+ PTP+ W G P L P LL
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQACPTPEYRWY----AQTGSEPMLVLSGPRTRLLG 292
Query: 482 PPFRAKDYRQEVHAQVYACLARNPVG 559
+ E + +Y C A NP G
Sbjct: 293 SVLALEAVTLEDNG-IYRCSASNPGG 317
Score = 21.0 bits (42), Expect = 9.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 383 SPTPDIIWVRADGTTVGDVPGLRQVLPNGNLL 478
SP+ ++ VR G G P + PN L
Sbjct: 1484 SPSSPVLSVRTQGQAPGIPPAATFLSPNSTTL 1515
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 120 bits (290), Expect = 8e-30
Identities = 55/98 (56%), Positives = 71/98 (72%)
Frame = +2
Query: 299 GPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNLL 478
GP F+ EPP+RV+FSN++GA ++C A GSP +I W ADG V DVPG+R+VL NG L+
Sbjct: 29 GPSFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTADGHPVNDVPGVRRVLRNGTLV 88
Query: 479 FPPFRAKDYRQEVHAQVYACLARNPVGTILSRDVNVRA 592
PF A +RQ+VH+ Y C+A N VG +LSRDV VRA
Sbjct: 89 LLPFPAAAFRQDVHSAAYRCVASNSVGRVLSRDVQVRA 126
Score = 44.4 bits (100), Expect = 9e-07
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +2
Query: 296 IGPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQ-----VL 460
+ P ++ EP + V + C A+G PTP I+W +A G+ G+ LR+ +L
Sbjct: 704 VPPRWIVEPTD-VSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKIL 762
Query: 461 PNGNLLFPPFRAKDYRQEVHAQVYACLARNPVGTILSRDVNVR 589
NG LL + +E Y C A N +G+ + + V ++
Sbjct: 763 SNGTLLL------QHVKEDREGFYLCQASNGIGSGIGKVVQLK 799
Score = 26.2 bits (55), Expect = 0.24
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +2
Query: 359 TVECAARGSPTPDIIW 406
+++C+A G+PTP + W
Sbjct: 440 SLKCSAAGNPTPQVTW 455
Score = 25.0 bits (52), Expect = 0.56
Identities = 22/86 (25%), Positives = 31/86 (36%)
Frame = +2
Query: 302 PIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNLLF 481
P + E V + ++ C A+ PTP+ W G P L P LL
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQACPTPEYRWY----AQTGSEPMLVLSGPRTRLLG 292
Query: 482 PPFRAKDYRQEVHAQVYACLARNPVG 559
+ E + +Y C A NP G
Sbjct: 293 SVLALEAVTLEDNG-IYRCSASNPGG 317
Score = 21.0 bits (42), Expect = 9.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 383 SPTPDIIWVRADGTTVGDVPGLRQVLPNGNLL 478
SP+ ++ VR G G P + PN L
Sbjct: 1480 SPSSPVLSVRTQGQAPGIPPAATFLSPNSTTL 1511
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 29.5 bits (63), Expect = 0.026
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +2
Query: 356 ATVECAARGSPTPDIIWVRADGTTVGDVPGLRQVLPNGNLLFPPFRAKDYRQEVHAQVYA 535
A + C G P P + W++ D D P ++ NG L + DY Y
Sbjct: 419 ANIRCHVAGEPLPRVQWLKNDEALNHDQPDKYDLIGNGTKLI--IKNVDY---ADTGAYM 473
Query: 536 CLARNPVGTILSRDVN 583
C A + G ++RD++
Sbjct: 474 CQASSIGG--ITRDIS 487
Score = 26.2 bits (55), Expect = 0.24
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 362 VECAARGSPTPDIIWVR--ADGTTVGDVPGLRQVLPNGNLLFPPFRAKDYRQEVHAQVYA 535
++C G+P P ++W R AD T+ + P +R V +G+L Q +HA Y
Sbjct: 330 IKCDVTGTPPPPLVWRRNGADLETLNE-PEIR-VFNDGSLYLTKV------QLIHAGNYT 381
Query: 536 CLA 544
C A
Sbjct: 382 CHA 384
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 24.2 bits (50), Expect = 0.98
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 299 GPIFMKEPPNRVDFSNTTGATVECAARGSPTPDIIWVRADG 421
G +K +D+ T C A G P P+I W++ DG
Sbjct: 21 GARIVKASHFELDYMLGRKITFFCMATGFPRPEITWLK-DG 60
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.4 bits (48), Expect = 1.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 346 YDRCDC*MCCP 378
+D CDC M CP
Sbjct: 752 FDACDCEMTCP 762
>AF213011-1|AAG43567.1| 62|Apis mellifera esterase A2 protein.
Length = 62
Score = 22.6 bits (46), Expect = 3.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 488 MAGTTSFHLARPD 450
++GT+SFH RPD
Sbjct: 30 ISGTSSFHEMRPD 42
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 22.2 bits (45), Expect = 3.9
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +1
Query: 424 YRRRCPWIASGLAKWKLV---VPAIPC--QRLPPGSTRSGLCLSR 543
+RR + S +KW + AI C QR GS R+G+C+ R
Sbjct: 59 HRRVTCDVLSWQSKWLSINHSACAIRCLAQRRKGGSCRNGVCICR 103
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.8 bits (44), Expect = 5.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 401 IWVRADGTTVGDVPGLRQVLPNGNL 475
IW+ + G T+ + G + +P GN+
Sbjct: 175 IWLFSLGWTIAPMFGWNRYVPEGNM 199
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.8 bits (44), Expect = 5.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 401 IWVRADGTTVGDVPGLRQVLPNGNL 475
IW+ + G T+ + G + +P GN+
Sbjct: 51 IWLFSLGWTIAPMFGWNRYVPEGNM 75
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.4 bits (43), Expect = 6.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 300 PMVSSSHSTDPKAASATRAVKIVVAISLARHFTIHLIHL*TSN 172
P++ H DP ASAT + I F + L T+N
Sbjct: 327 PLLDKMHIDDPVGASATHGASGIWGIIAIGLFADNPYPLNTTN 369
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 500 DYRQEVHAQVYACLARNPVGTILSRDVNV 586
DYR H + +NP GTI+ N+
Sbjct: 182 DYRVWNHQLISYAGYKNPDGTIIGDPANI 210
>EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle
protein protein.
Length = 138
Score = 21.0 bits (42), Expect = 9.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -2
Query: 259 QRHEGGENRSSHITSTTLHYSLDS--LINFK*EN 164
QR GG ++ + ITS L + D + NF+ N
Sbjct: 17 QRPSGGADKDAVITSQQLEVNFDGNYINNFETSN 50
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,152
Number of Sequences: 438
Number of extensions: 4423
Number of successful extensions: 26
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -