Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d01
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    29   2.3  
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279           29   3.0  
06_01_0603 - 4350124-4350590,4350995-4353608                           29   3.0  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   5.3  
05_01_0051 - 345125-345693,345833-346925                               28   7.0  
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983...    27   9.2  
01_01_1055 + 8342761-8342822,8343374-8343791,8343867-8344096,834...    27   9.2  

>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 493 FLCGHDAAVRRKEFVQDRPDYKLDAATGYSELRPRRR 603
           FL  H   VRR E +++  D KLD  +  +E+ PRRR
Sbjct: 604 FLSSHLTNVRRLEQLKNLIDSKLDHQSLVTEVSPRRR 640


>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
          Length = 1066

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = -1

Query: 580 SSQSPRQVCSLADLEQIPFGVQQRRGRIEMAL-DGSGIKLYRRLGVLEQAQRRLSGGALG 404
           +S +P+++  LAD+ +    +     ++  +L DG  +  + RL VL+ +  +LSG   G
Sbjct: 252 TSTTPKELKFLADISETVLYLNLSNNKLTGSLIDGVELSTFGRLKVLDLSHNQLSGDLPG 311

Query: 403 -QHVFVKPILQL 371
             +V+   +L+L
Sbjct: 312 FNYVYDLEVLRL 323


>06_01_0603 - 4350124-4350590,4350995-4353608
          Length = 1026

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 580 SSQSPRQVCSLADLEQIPFGVQQRRGRIEMALDGSGIKLYRRLGVLEQAQRRLSGG 413
           S + P ++ SL+ L Q+     +  G I      +GI L RRL  L+ +  RLSGG
Sbjct: 116 SGEIPAELASLSRLTQLSLTGNRLEGAIP-----AGIGLLRRLYFLDLSGNRLSGG 166


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 396 CS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTC 265
           C+   F SS AL+IL    N   P + S  + VC   G+  L C
Sbjct: 638 CNSMSFMSSIALIILLVNPNLYRPAIRSYALSVCTAVGMFALLC 681


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 491 HFYAATTLLYAERNLF 538
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


>06_03_0956 +
           26296744-26297382,26297595-26297669,26298147-26298341,
           26298426-26298559,26298713-26298779,26298985-26299043,
           26299204-26299321,26299613-26299726,26299855-26299986,
           26300076-26300492,26300904-26300954,26301303-26301373,
           26302067-26302151,26302258-26302410,26302522-26302596,
           26302755-26302844,26303953-26304000,26304081-26304195,
           26305356-26305459,26305582-26305692
          Length = 950

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = +1

Query: 292 FADANNITRQNRRYTVVHALQDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDGKV* 471
           +A+   + +   R+  +H L +   GG  KL    +VA V      +  +   P DG   
Sbjct: 555 YAEGRPLGKSGLRWLKIH-LANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCW 613

Query: 472 FRSRRGPFLC 501
           + +   PF C
Sbjct: 614 WMNAEDPFQC 623


>01_01_1055 +
           8342761-8342822,8343374-8343791,8343867-8344096,
           8344136-8344324,8344458-8344555,8344588-8344742
          Length = 383

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 500 HRNGPRRERN*TLPSLGRLGAGSTPTVGRCTGATRV 393
           H +  R   + T+P L  +G+ ST  VGRCT   RV
Sbjct: 12  HNDERRNGTSKTVPELSTVGSKST--VGRCTALQRV 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,294,010
Number of Sequences: 37544
Number of extensions: 356272
Number of successful extensions: 1010
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)