Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d01
         (628 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    25   2.0  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   7.9  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 137 RFVARDIANKLKFKNTK---KAIRDHVDGKYKCTFEQACINISKEKHVKQGNPLYLQTQT 307
           RFVA+ + NK KF++ K   K +   +D  +   F  AC+ +     + Q   LY  TQ 
Sbjct: 476 RFVAQHVRNKDKFESVKEDWKYVALVLDRLFLWIFTIACV-LGTCLIILQAPSLYDNTQP 534

Query: 308 I 310
           I
Sbjct: 535 I 535


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +1

Query: 502 GHDAAVRRKEFVQDRPD-----YKLDAATGYSELRPRRR 603
           G+   V+R EF+ + PD     Y  D A  Y E +P  R
Sbjct: 374 GYREFVKRVEFIDNSPDYMQLRYTTDCAGLYREPQPINR 412


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,805
Number of Sequences: 2352
Number of extensions: 13521
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)