Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21d01
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    32   0.29 
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    32   0.29 
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    29   2.1  
U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical p...    29   3.6  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z22181-9|CAA80186.1|  453|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    27   8.3  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    27   8.3  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 405  GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 244
            GN     + C+++   +     +CI   LSSN+ C C   Y+G  C T  S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 405  GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 244
            GN     + C+++   +     +CI   LSSN+ C C   Y+G  C T  S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 158 ANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQGN-PLYLQT 301
           + KL+F      +R    GKYKC    A +N SKE HV++   P+ L +
Sbjct: 278 SGKLEFCLEIPKVRLKDMGKYKCVASLAGLNSSKEFHVERDKIPIVLNS 326


>U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical
           protein K05F1.1 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -2

Query: 441 SRLNADCRAVHWGNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTCF 262
           S L   C+ +   + C  ++FCS+  L + ++ NN    I S N+ C        C+   
Sbjct: 71  SSLKVTCKLL---SDCQPDEFCST--LGVCDKKNNECLYISSVNVTCKSDCESSTCILLN 125

Query: 261 SLLILIHAC 235
           ++   IH C
Sbjct: 126 NITKEIHCC 134


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 288 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 377
           C C+R  Y  T+   YSCSC    P ++SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 288 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 377
           C C+R  Y  T+   YSCSC    P ++SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66


>U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical
           protein T22F3.7 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 74  KFKFGEDTFTLRYVLGGEQPVRFVARDIANKLKF 175
           KF   E  F    +LG   PVRFV   I++KLKF
Sbjct: 309 KFGVTETGFYASLILGISLPVRFVFALISDKLKF 342


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 288 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 377
           C C+R  Y +T+   YSCSC    P + SC
Sbjct: 58  CSCQRTTY-TTQPQQYSCSCQNTAPVQASC 86


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +2

Query: 221 KCTFEQACINISKEKHVKQGNPLYLQTQTILLDKIGVIQLFMRSKMTNAAELQNWFYEHV 400
           KC F     +I K  H  +G+PLYL  ++I   KI  I    R     A  LQN   E +
Sbjct: 36  KCFFR----SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGM 91

Query: 401 LP 406
            P
Sbjct: 92  PP 93


>Z22181-9|CAA80186.1|  453|Caenorhabditis elegans Hypothetical
           protein ZK632.11 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 149 RDIANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQG 280
           RD   +  F+   +  R+  DG+ +  +    I+  +EKH K G
Sbjct: 121 RDCTQRKDFRRISRKKRESGDGRQRVFYNDVGISKQREKHFKPG 164


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +2

Query: 89  EDTFTLRYVLGGEQPVRFVARDIANKLKFKNTKKA-----IRDHVDGKYKCTF 232
           +  F  + V GG   V  +  D   K+ +K+TKK       +  V+G YK  F
Sbjct: 41  DTVFEFQVVTGGHYDVDLIIEDPNGKVLYKDTKKQYDSINFKAEVEGTYKACF 93


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 451 GVLEQAQRRLSGGA-LGQHVFVKPILQLRRVGHLGAHE 341
           G+L  +Q+RL G   L Q+VF+K    L   GH   H+
Sbjct: 153 GLLSDSQKRLVGNCGLAQNVFLKHQPDLYPTGHESEHD 190


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +3

Query: 147 PGTLQTN*NLKTPK-----KQLEITSTASTNAHSSKRV-LISAKKNTL 272
           P T QT+ NL TPK     K L+  ST  T +  S  V L S ++N L
Sbjct: 100 PSTPQTSSNLNTPKRTPQVKNLQAESTTPTVSRPSSEVDLTSFRRNQL 147


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +3

Query: 147 PGTLQTN*NLKTPK-----KQLEITSTASTNAHSSKRV-LISAKKNTL 272
           P T QT+ NL TPK     K L+  ST  T +  S  V L S ++N L
Sbjct: 118 PSTPQTSSNLNTPKRTPQVKNLQAESTTPTVSRPSSEVDLTSFRRNQL 165


>Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical
           protein T01H3.3 protein.
          Length = 599

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 92  DTFTLRYVLGGEQPVRFVARDIANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKE 262
           +T T+R V    + V     D     + + T K +RD  DGK +   EQ   N+S E
Sbjct: 132 ETTTVRAVRTTTKKVETTTSDDVVAREVERTLKKLRDAEDGKSESIPEQLFENVSNE 188


>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 74  KFKFGEDTFTLRYVLGGEQPVRFVARDIANKLKFKNTKKAI 196
           KF   E  F +  VL    P+RFVA   ++K +F + K  I
Sbjct: 242 KFGITETGFYVALVLFSYMPIRFVAAIFSDKFRFISEKLKI 282


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 288 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 377
           C C+R  Y  T+   YSCSC    P + SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66


>AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.5 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 288 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 377
           C C+R  Y  T+   YSCSC    P + SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66


>AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.4 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 288 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 377
           C C+R  Y  T+   YSCSC    P + SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 288 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 377
           C C+R  Y  T+   YSCSC    P + SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,470,076
Number of Sequences: 27780
Number of extensions: 283866
Number of successful extensions: 990
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)