Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21c19
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 31 0.96
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 29 2.9
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 29 2.9
03_01_0298 + 2318836-2319051,2321238-2323106 29 2.9
04_04_0463 - 25397837-25399693,25402136-25402405 28 6.8
09_06_0341 + 22406709-22407860 27 8.9
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076... 27 8.9
03_06_0629 + 35187318-35187320,35187424-35187534,35188089-351881... 27 8.9
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 27 8.9
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 30.7 bits (66), Expect = 0.96
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 324 YTSKRDRFYESFKRY-HAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQ 500
Y S++ R Y Y YE +N +++++ K ++ T+ + + S K +
Sbjct: 2165 YKSRQCRTYFHLAHYTDGLFKSYEERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSE 2224
Query: 501 KT-YELAEFDLKNLSSLESYETLKIKLALSKYMAML 605
KT Y + +L+ +L+ E KI+ +K+ A +
Sbjct: 2225 KTDYSVKIQELQKQLALDEEEAGKIQCTHAKFSAKI 2260
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 423 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 602
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 603 LSTL 614
TL
Sbjct: 290 AETL 293
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 423 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 602
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 603 LSTL 614
TL
Sbjct: 290 AETL 293
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 183 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 281
A H F HF C SSN NYVC + + WK+L
Sbjct: 92 AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 183 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 281
A H+F HF C SSN NY C I + WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143
>09_06_0341 + 22406709-22407860
Length = 383
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 429 KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYE 560
+MK V + E+ +D +++ EL+ DLKNL+ +ES E
Sbjct: 310 RMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLADIESPE 353
>09_06_0309 -
22206812-22206884,22207008-22207103,22207531-22207619,
22207738-22207820,22207932-22208048,22208132-22208319,
22208430-22208500,22208570-22208782,22210022-22210081,
22210186-22210476,22210590-22211894
Length = 861
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 150 HRCAVRKLFKQANSKH-VFDHFGCSSNYCFN 239
H C +RKL K S+H + + S +CFN
Sbjct: 637 HPCRLRKLLKSVASRHGLISGWKFSGKHCFN 667
>03_06_0629 +
35187318-35187320,35187424-35187534,35188089-35188191,
35188357-35188416,35188502-35188661,35188755-35188872
Length = 184
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 183 ANSKHVFDHFGCSSNYCF 236
AN VFD C+S YCF
Sbjct: 105 ANLNRVFDQTACTSKYCF 122
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 183 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 281
A H+F HF C SS+ NYVC + + WK++
Sbjct: 12 AECSHMF-HFHCISSSVKHGNYVCPVCRAKWKEI 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,644
Number of Sequences: 37544
Number of extensions: 198981
Number of successful extensions: 403
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -