Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21c11
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 29 0.42
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 3.9
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 26 5.1
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 26 5.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.8
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 6.8
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 9.0
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 9.0
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 9.0
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 29.5 bits (63), Expect = 0.42
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 39 HRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLT 194
HR+DI++ Q + L+ K Q +N+ ++ K + EK + L DN++
Sbjct: 59 HRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVS 110
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 39 HRVD--IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKS 152
HR++ ++ ++ E++ +S L++L+ Q+D N N+K+
Sbjct: 735 HRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 471 KLLLKKTRDALLPFYK-YISICKNGVMVRRDEKSRVFIVKNEQNIEYLKAN 620
K+++ +D L+ FY + CK + + +VF KNE N+E +K N
Sbjct: 152 KVVMDDKKDVLVEFYADWCGYCKR-LAPTYETLGKVF--KNEPNVEIVKIN 199
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 128 FVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWCVKY 18
F RF+Q+ +R + L + N I PM+++C KY
Sbjct: 586 FKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC-KY 621
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 69 FEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
F+ L+++ LKS+ +TQ+D + + M+ L D+L S+E
Sbjct: 3741 FKHLVSLQSLKSISRTQVDLTNDEFLNLMNFVLNLF--DSLLSSIE 3784
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 165 LKRLECDNLTDSVEIYGIHDNRLNN 239
LK LECD L S+E+ H + ++
Sbjct: 3 LKCLECDKLLSSIEMAEFHSTKTSH 27
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 372 WQTMSRERRLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKY 521
+++++ E++ + FN + ++D P I + L LK+ R +P Y +
Sbjct: 59 YKSLNAEQKKRAFNNDYDFDSPEAIDWDLLFVKLLELKQGRKVDIPIYSF 108
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Frame = +3
Query: 231 LNNKKIRNYYLKKICILLN-----LNFKHVIESSFDKNHIVAKLCDATRAKEWQTMSRER 395
+N + + Y L+K ILL+ +NFKH++ ++H++ ++E S +
Sbjct: 1 MNFRPEQQYILEKPGILLSFEQLRINFKHILRHLEHESHVINSTLTTLISQE--NASMDE 58
Query: 396 RLKNFNLNINYDGPVKIFVAATAE-QKLLLKKTRDALL 506
+++ + ++ VK + + + L +K+T+ LL
Sbjct: 59 KIEKIDSLLSRVSTVKKKMKHLHDCEALFIKQTKSRLL 96
>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 126
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 126 ENVSDNIKSMSEKLKRLECDN 188
ENV + K + EK+K LE DN
Sbjct: 99 ENVLASYKHLCEKIKYLEADN 119
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 90 SLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
S +KS+ K Q+ S ++ + C N TDSVE
Sbjct: 1673 SKVKSINKDQVFNAFSPDVSERPPLFEVASCSNETDSVE 1711
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,867
Number of Sequences: 5004
Number of extensions: 39995
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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