Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21c09
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 34 0.020
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 33 0.035
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.18
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit... 28 0.98
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 0.98
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 1.3
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 27 1.7
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 2.3
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 3.0
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 26 5.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.2
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 25 6.9
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 9.1
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 25 9.1
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 33.9 bits (74), Expect = 0.020
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -2
Query: 504 NRSLESRVDLGL---EIRSFKDELVGLRTDLRECRNDIAEFKELLKSCHGRIDAVEARVL 334
N + S+ DLG E+ S +L GLR D N E K+ + G+ V+AR+
Sbjct: 316 NLLVHSKNDLGKQKGELVSLDSQLEGLRVDDPNSANQSFESKKASINLEGKELMVKARIE 375
Query: 333 GLEARLAEIVSTA 295
LE R+ +I S A
Sbjct: 376 DLEVRINKITSVA 388
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 33.1 bits (72), Expect = 0.035
Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = -2
Query: 498 SLESRVDLGLEI-RSFKDELVGLRTDLRECRNDIAEFKELLKSCHGRIDAVEARVLGLEA 322
+L+ +++ G ++ + +++ L DL + + LK+ D++++ V +
Sbjct: 866 NLQEKINFGNKLAKEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSLKS-VSNDDQ 924
Query: 321 RLAEIVSTAAGSDLDSTVAELRIQLRERDQDLLRNDIDIIGL 196
+ V+ ++ +AE +L RD+++ R +DIIGL
Sbjct: 925 NKEKSVNNEKFKEVSQALAEANEKLNARDEEIERLKVDIIGL 966
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 30.7 bits (66), Expect = 0.18
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -2
Query: 420 RECRNDIAEFKELLKSCHGRIDAVEARVLGLEARLAEIVSTAAGSDLDSTVAELRIQLRE 241
R+C++ EFK L+ G ++A R+ LE R+ + + + S +S A R+ L
Sbjct: 961 RKCQSMEREFKTELRKLDGVLEARSKRLSQLEERVKLLGAGSTSSIPNSPRASKRVSLDS 1020
Query: 240 RDQDLL 223
D+ L+
Sbjct: 1021 EDKKLV 1026
>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
Tom40|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 0.98
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = -2
Query: 546 HHTSSEGDVDADTMNRSLESRVDLGLEIRSFKDEL---VGLRTDLR-ECRNDIAEFKELL 379
H S+GDV A T R L +V+ G+E + L L T + E + E
Sbjct: 216 HLNGSQGDVTA-TFWRKLSPKVEAGVECQLSPVGLNHSAALMTGPKPEGLTSVGVKYEFA 274
Query: 378 KSCH-GRIDAVEARVLGLEARLAEIVSTAAGSDLD 277
+S + G++D+ + LE RLA ++ A S+LD
Sbjct: 275 QSIYRGQVDSKGRVGVYLERRLAPAITLAFSSELD 309
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 28.3 bits (60), Expect = 0.98
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 383 SSLNSAISFRHSLKSVLRPTSSSLKDRISKPRSTRDSSDRFIVSASTSPSLEV*CTPT 556
SS+N ++ R S+ ++LRP S S + T D D S+S + + P+
Sbjct: 114 SSINGSLLRRSSVSTILRPASESSYPNSNSETITYDIDDNVNPSSSLVDNFSISSVPS 171
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -2
Query: 489 SRVDLGLEIRSFKDELVGLRTDLRECRNDIAEFKELLKSC 370
SR+D +++++ + L+ L +CR++I F + + +C
Sbjct: 665 SRLDAIKNVKTYQIKFSDLQESLEKCRSEIESFDQKITAC 704
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 319 TSLKTKHSGFHRVDASMTRLEELLKLSDI 405
TSL++ GF R+ RLE + +LSD+
Sbjct: 146 TSLESNQDGFERLHPLAERLERMSQLSDL 174
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 56 LSLPSMKLRLTAPIRSA*TMSRMSSFTPSFTAT 154
LS S +++ TAPI S ++S +PSFT++
Sbjct: 57 LSEMSKRVQATAPISSLEHFKQLSDISPSFTSS 89
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = -2
Query: 561 TAVGVHHTSSEGDVDADTMNRSLESRVDLGLEIRSFKDELVGLRTDLRECRNDIAEFKEL 382
+A+ V S+E + D ++S+ + E+RS + + L TD++ D+ K+
Sbjct: 52 SAIRVEQLSAENNQD---FSKSVNQLSVVRSELRSLQSLMADLNTDIQASGRDLQNMKQQ 108
Query: 381 LKS 373
L S
Sbjct: 109 LNS 111
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 393 TQRYHFGTLSSQFLGPPAHP*KIGFLNQGRHETP 494
+ YHF L + F P + I F +GR +TP
Sbjct: 386 SHEYHFKDLENYFKLPSEYNNGISFAAKGRRKTP 419
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.2
Identities = 23/96 (23%), Positives = 46/96 (47%)
Frame = -2
Query: 507 MNRSLESRVDLGLEIRSFKDELVGLRTDLRECRNDIAEFKELLKSCHGRIDAVEARVLGL 328
+ S +S + ++ S + + L+ DLR+ + K K+ ID ++ + L
Sbjct: 670 LEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETL 729
Query: 327 EARLAEIVSTAAGSDLDSTVAELRIQLRERDQDLLR 220
EA+ ++ S+ SD +T A L +L + +D+ R
Sbjct: 730 EAQRNDLHSSL--SDAKNTNAILSSELTKSSEDVKR 763
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 352 RVDASMTRLEELLKLSDIISALSQVSS*AHQLI 450
R+ AS +ELL SD+IS ++ H LI
Sbjct: 200 RLGASFVSFDELLSSSDVISINCPLTPATHDLI 232
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 636 RGWICPSCSAKVPRGDNTATPVRGL 562
+ ++CP CS K R ++ +R L
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSL 445
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 540 TSSEGDVDADTMNRSLESRVDLGLEIRSFKDE 445
TSS+G+ + N S+ + D+G E R+F+ E
Sbjct: 515 TSSQGN---EVWNESITKQADVGNETRNFESE 543
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,253
Number of Sequences: 5004
Number of extensions: 48523
Number of successful extensions: 175
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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