Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21c09
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.61 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 486  RVDLGLEIRSFK--DELVGLRTDLRECRNDIAEFKELLKSC 370
            R+D+  ++R      ELVG  + +++C  D+    ++L++C
Sbjct: 1284 RIDMNGKLRQSPRLKELVGATSIIKDCVEDMKRGNKILRTC 1324


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -2

Query: 618 SCSAKVPRGDNTATPVRGLTAVGVHHTSSEGDVDA-DTMNRSLESRVDLGLEIRSFKDEL 442
           SC   V R      P+  LTA+GV +   + +  A +   R+L S    G  + ++  + 
Sbjct: 146 SCHTGVGRNVGYKIPITKLTAMGVLNNLHDPEYSARENELRALSSLFSKGCLVGTWSPD- 204

Query: 441 VGLRTDLRECRNDIAEFKELLKSC 370
             +   L+E  +++    E  + C
Sbjct: 205 PAINRRLKETYSNMCALCEKPEVC 228


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -2

Query: 618 SCSAKVPRGDNTATPVRGLTAVGVHHTSSEGDVDA-DTMNRSLESRVDLGLEIRSFKDEL 442
           SC   V R      P+  LTA+GV +   + +  A +   R+L S    G  + ++  + 
Sbjct: 146 SCHTGVGRNVGYKIPITKLTAMGVLNNLHDPEYSARENELRALSSLFSKGCLVGTWSPD- 204

Query: 441 VGLRTDLRECRNDIAEFKELLKSC 370
             +   L+E  +++    E  + C
Sbjct: 205 PAINRRLKETYSNMCALCEKPEVC 228


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -2

Query: 618 SCSAKVPRGDNTATPVRGLTAVGVHHTSSEGDVDA-DTMNRSLESRVDLGLEIRSFKDEL 442
           SC   V R      P+  LTA+GV +   + +  A +   R+L S    G  + ++  + 
Sbjct: 146 SCHTGVGRNVGYKIPITKLTAMGVLNNLHDPEYSARENELRALSSLFSKGCLVGTWSPD- 204

Query: 441 VGLRTDLRECRNDIAEFKELLKSC 370
             +   L+E  +++    E  + C
Sbjct: 205 PAINRRLKETYSNMCALCEKPEVC 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,744
Number of Sequences: 438
Number of extensions: 3446
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)