Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21c02
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 216 2e-57
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 65 1e-11
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 46 5e-06
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 41 2e-04
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 38 0.001
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 36 0.007
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 35 0.013
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 34 0.017
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 33 0.029
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 33 0.029
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.038
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 33 0.051
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 33 0.051
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 32 0.067
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 32 0.089
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.16
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 31 0.16
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.20
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 31 0.20
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.27
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 30 0.36
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 29 0.47
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.47
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 0.63
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.83
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.83
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.1
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 28 1.4
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 28 1.4
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.9
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 27 1.9
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 2.5
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 4.4
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 4.4
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 5.8
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.8
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 5.8
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 5.8
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 5.8
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 7.7
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 25 7.7
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 7.7
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 7.7
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 216 bits (528), Expect = 2e-57
Identities = 89/148 (60%), Positives = 116/148 (78%)
Frame = +1
Query: 232 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 411
HA+N R++ + N+V +Y+++GN WK +HD V +DWAP +NRIVTCS D
Sbjct: 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76
Query: 412 RNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWW 591
RNAYV+ + DG W TLVLLR+NRAAT V+WSP E+KFAVGSGAR+IS+CYFE+EN+WW
Sbjct: 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW 136
Query: 592 VSKHIKKPIRSTVTSIDWHPNNILLVAG 675
VSKH+K+P+RST+ S+DWHPNN+LL AG
Sbjct: 137 VSKHLKRPLRSTILSLDWHPNNVLLAAG 164
Score = 40.3 bits (90), Expect = 3e-04
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Frame = +1
Query: 199 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIY-KKEGNDWKQTNNLVEHDLRVMGIDWA 375
TF D +TC W ++I + ++Y K+ WKQT L+ + + W+
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
Query: 376 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR-INRAATCVKWSPMENKFAVGSGAR 549
PN ++ S R V + W + L R + + W P A G R
Sbjct: 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1
Query: 238 WNKDRSQIAFSPNNNEVHI-YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSV 408
W+ + + A + + Y ++ NDW + +L + LR ++ +DW PN +
Sbjct: 108 WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCA 166
Query: 409 DRNAYV 426
DR AYV
Sbjct: 167 DRKAYV 172
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 64.9 bits (151), Expect = 1e-11
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 1/147 (0%)
Frame = +1
Query: 235 AWNK-DRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 411
AW +R +A + ++ V I +K +DW+ T L H+ V I W+ N N + TCS D
Sbjct: 340 AWRPIERPVLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRD 399
Query: 412 RNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWW 591
++ ++W +D ++ VL + V W P E+ GS SIC++ + + W
Sbjct: 400 KSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVSGSYDN--SICFWRDDGDDW 457
Query: 592 VSKHIKKPIRSTVTSIDWHPNNILLVA 672
+ +TV ++ + PN L +
Sbjct: 458 ALTCQLQGHTNTVWALAFSPNGNTLAS 484
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/103 (21%), Positives = 43/103 (41%)
Frame = +1
Query: 238 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 417
W+ + +N + ++ +G+DW T L H V + ++PN N + + D N
Sbjct: 431 WHPTEDLLVSGSYDNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGN 490
Query: 418 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGA 546
++W + + T+ I R A +W + + GA
Sbjct: 491 VFLWIKISSNEDVATIDSTNILRPALQEEWKQQTSLPHIHKGA 533
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/111 (20%), Positives = 41/111 (36%)
Frame = +1
Query: 343 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 522
H + + W P ++ + + + D W T L C+ WS N
Sbjct: 332 HTRSIRRVAWRPIERPVLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGN 391
Query: 523 KFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAG 675
A S + + I + E++ + + + V + WHP LLV+G
Sbjct: 392 YLATCSRDKSVWI-WEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVSG 441
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 46.0 bits (104), Expect = 5e-06
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +1
Query: 310 NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSVDRNAYVWTQGDDGKW-ATTLVLL 474
N+W + L H + WAP+ + + S D+N ++WT+ DG W T L
Sbjct: 193 NNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQKTPLTEE 252
Query: 475 RINRAATCVKWSPMENKFAVGSGARLISICYFEKENNW 588
+ A V WS N AV G + + + E +N W
Sbjct: 253 KFPDIAWRVSWSLSGNILAVSCGDNKVYL-FKESQNKW 289
Score = 32.7 bits (71), Expect = 0.051
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +1
Query: 259 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWT 432
+A + + V ++++ G W + + H V + WAP+ ++ C S D V
Sbjct: 70 LASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLE 129
Query: 433 QGDDGKWATTLVLLRINRAATCVKWSP 513
DDG T + V WSP
Sbjct: 130 FKDDGS-CDTRIFTAHEPGCNAVCWSP 155
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 235 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL 336
+W+ + +A S +N+V+++K+ N W+ N L
Sbjct: 262 SWSLSGNILAVSCGDNKVYLFKESQNKWQLLNEL 295
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 40.7 bits (91), Expect = 2e-04
Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 9/148 (6%)
Frame = +1
Query: 238 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNN-LVEHDLRVMGIDWAPNTNRIVT-CSVD 411
W+ + N NE+ + K W+ ++ + H V + W+P+ + + CS D
Sbjct: 254 WSPFEYSLLSGDNANEIFLTKYSNGGWQTDSSPFLSHTAAVEDLQWSPSEKNVFSSCSCD 313
Query: 412 RNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP-MENKFAVGSGARLISICYFEKENNW 588
+W + K + V + W+ + N A G+ + S+ +
Sbjct: 314 GTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLATGADNGVWSVWDLRSLKS- 372
Query: 589 WVSKHIKKPI------RSTVTSIDWHPN 654
S + P+ R+ + SI+WHPN
Sbjct: 373 --SSSVATPVASFKWHRAPIYSIEWHPN 398
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Frame = +1
Query: 199 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWK----------QTNNLVEHD 348
T ++ + + C A++ D S A ++ +H+Y N + Q ++L+ H
Sbjct: 344 TMHNTLSAVNCAAFSDDASMFALGCADSSIHLYSSTNNGPQPLVGSQNEPLQKSSLIGHT 403
Query: 349 LRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKF 528
V G+ +P I++CS D +W++ D K +T + N V++SP F
Sbjct: 404 RPVFGVSISPQKEFILSCSEDGFTRLWSK--DTK-STIVKYAGHNAPIWDVQFSPFGYYF 460
Query: 529 AVGS 540
A S
Sbjct: 461 ATAS 464
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 35.5 bits (78), Expect = 0.007
Identities = 33/114 (28%), Positives = 47/114 (41%)
Frame = +1
Query: 334 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 513
L H+ V + +PN I T S D +W+ + L R + VKW+
Sbjct: 50 LFGHEKSVTCVSVSPNKRWIATSSSDGTIKIWSA---LTFRLECTLFGHYRGISQVKWAT 106
Query: 514 MENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAG 675
A S + I I FEK S K + V+SID++P LLV+G
Sbjct: 107 GSKYLASASDDKTIRIWDFEKR----CSVRCLKGHTNYVSSIDFNPLGTLLVSG 156
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 259 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 429
+A S +N V +Y + K NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 549 VAASLLDNTVKVYYLDS--LKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 331 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 477
++ H +M + + P+T TCS DR W DGK ++ LR
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW----DGKSFDLILKLR 657
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +1
Query: 205 GDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT 384
G A C AW+ D + S + + ++ K +L H+ +V +DW+P+
Sbjct: 429 GHVAAVYQC-AWSTDSRLLVSSSQDTTLKVWDVRSK--KMKFDLPGHEDQVFAVDWSPDG 485
Query: 385 NRIVTCSVDRNAYVWT 432
R+ + D+ +W+
Sbjct: 486 QRVASGGADKAVRIWS 501
Score = 26.6 bits (56), Expect = 3.3
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Frame = +1
Query: 223 ITCHAWNKDRSQIAFSPNNNEVHIY-KKEGNDWKQTNNLVEHDLRVMGIDW-----APNT 384
++C AW D S IA +N + + K+G+ L H +M + W AP++
Sbjct: 180 VSCVAWAPDASIIATGSMDNTIRFWDPKKGSPIGDA--LRRHTKPIMALCWQPLHLAPDS 237
Query: 385 N--RIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRA-ATCVKW 507
+ + S D +W + K T L L + A TCV+W
Sbjct: 238 GPYLLASGSKDNTVRIW----NVKLRTLLFTLSGHTAPITCVRW 277
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 33.5 bits (73), Expect = 0.029
Identities = 33/146 (22%), Positives = 57/146 (39%)
Frame = +1
Query: 235 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 414
A + D + + +V+++ E N+++ N +H +P+ I SVD
Sbjct: 66 ATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDG 125
Query: 415 NAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWV 594
VW D K + L + C+ +SP +F V SG + + E
Sbjct: 126 RIAVWDNPSDCKISE---LDTKGKFGLCIDYSP-NGRFIV-SGHQTGQLFLISTETGRLF 180
Query: 595 SKHIKKPIRSTVTSIDWHPNNILLVA 672
H+ S V S+ + P + LL A
Sbjct: 181 --HVLSGHTSPVRSVAFSPGSTLLAA 204
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 33.5 bits (73), Expect = 0.029
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +1
Query: 364 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSG 543
+DW+ N N +V +++RN YVW D G + L + VKWS + +VG G
Sbjct: 186 LDWS-NLN-VVAVALERNVYVW-NADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLG 241
Query: 544 ARLISICYFEKE 579
L+ I E +
Sbjct: 242 NGLVDIYDVESQ 253
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Frame = +1
Query: 235 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVT--CS 405
AW D Q+A N+N V I+ + K T H+ V + W P +N + T +
Sbjct: 311 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTK--TNHNAAVKAVAWCPWQSNLLATGGGT 368
Query: 406 VDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 513
+D+ + W + T + T + WSP
Sbjct: 369 MDKQIHFWNAATGARVNT----VDAGSQVTSLIWSP 400
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 208 DSCAPITCHAWNKDRSQI----AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA 375
D+ + +T W+ +I F NN + Y G KQ + + HD RV+ +
Sbjct: 388 DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-KQVD-IPAHDTRVLYSALS 445
Query: 376 PNTNRIVTCSVDRNAYVW 429
P+ + T + D N W
Sbjct: 446 PDGRILSTAASDENLKFW 463
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 33.1 bits (72), Expect = 0.038
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = +1
Query: 268 SPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 447
+P + + +Y E W Q L H L V I ++P+ I++ DR + Q ++
Sbjct: 554 TPEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAENL 611
Query: 448 KWATTLVLLRI-NRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRS 624
++ +R W+P E + + +R + +++ +N +
Sbjct: 612 LDYNNFASIKAHSRIIWDASWAPKEMGYFFATASRDKFVKFWKINDNKKICDVAALQFSD 671
Query: 625 TVTSIDWHP---NNILLVA 672
VT++D+ P N+ LL+A
Sbjct: 672 AVTAVDFAPFFHNDELLLA 690
Score = 32.7 bits (71), Expect = 0.051
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 334 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 462
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 238 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 417
WN + + + ++K++ W Q ++ H V G+ W P ++ D+
Sbjct: 334 WNPNGNCVVCWGRTGGWRLWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQT 393
Query: 418 AYVWTQ-GDDGKW 453
++ + D W
Sbjct: 394 TRLFARFKKDNAW 406
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 32.7 bits (71), Expect = 0.051
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 238 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDR 414
WN D SQ A N+N V ++K G+D +Q + + + V + + P + + T +
Sbjct: 330 WNHDGSQFASGGNDNRVCLFK--GSDLRQPLYVWQQNAAVKALSFCPWQRSLLATGAGSH 387
Query: 415 NAYV-WTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISI 561
+ ++ + +GK + L T + WSP +F+V G L ++
Sbjct: 388 DKHIRFYNCFNGK---KIDELYCGAQITSIHWSPKYREFSVTFGYSLETV 434
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 32.7 bits (71), Expect = 0.051
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +1
Query: 235 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 414
A++ +A S +++V IY+ + L EH V+ ++W+ + ++ + SVD+
Sbjct: 37 AFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDK 96
Query: 415 NAYVW 429
+A V+
Sbjct: 97 SAKVF 101
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 32.3 bits (70), Expect = 0.067
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 262 AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 441
A + ++N ++ + G ++ +L H V + ++PN R + D YV+
Sbjct: 163 ATASDDNSINFF--HGTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF---- 216
Query: 442 DGKWATTLVLLRINRAAT-CVKWSPMENKFAVGS 540
DGK + + ++ + + WSP ++F S
Sbjct: 217 DGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSS 250
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/81 (20%), Positives = 30/81 (37%)
Frame = +1
Query: 181 KMAQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVM 360
K + + AP T ++ +A N V I+ G D N + R+
Sbjct: 47 KQENCFQYNEHTAPTTVARFSPSGYYVASGDNQGNVRIWDCAGEDKILKNQVTAISGRIT 106
Query: 361 GIDWAPNTNRIVTCSVDRNAY 423
+DW ++ RI+ + Y
Sbjct: 107 DLDWDGDSQRIIAVGEGKERY 127
Score = 29.9 bits (64), Expect = 0.36
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 292 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 429
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +1
Query: 235 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 414
+WN + +A + + +HIY E K H L ++W + N +++ D
Sbjct: 529 SWNAKSTHLATASLDTNIHIYSVE-RPMKYIAMKNAHSLGATQVEWV-SENELLSTGSDA 586
Query: 415 NAYVWT 432
VW+
Sbjct: 587 AIKVWS 592
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 31.9 bits (69), Expect = 0.089
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +1
Query: 334 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 513
L H+ V+ ++++PN + +C D+ +W + K +L+ + CV+W P
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKK--KSLITINNVSPLNCVRWRP 274
Query: 514 MENKFAVGSGARLISICYFEKENNWW 591
N+ + GS S + N W
Sbjct: 275 -ANQQSRGSNQLASSSLVGDTAINVW 299
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +1
Query: 319 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 498
K+ L+ H V I W+P+ +++CS D++ +W D L + + +C
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW----DAFTGEKLRDYKHGFSVSC 301
Query: 499 VKWSPMENKFAVGS 540
W P F GS
Sbjct: 302 CCWLPDGLSFITGS 315
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 31.1 bits (67), Expect = 0.16
Identities = 25/111 (22%), Positives = 42/111 (37%)
Frame = +1
Query: 223 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 402
+ C W+ D + V ++ N+ K H++ V + ++PN ++ VT
Sbjct: 126 VRCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQ---AHEMEVRDVAFSPNDSKFVTA 182
Query: 403 SVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLI 555
S D + VW + L L V W P + A GS L+
Sbjct: 183 SDDGSLKVW---NFHMSTEELKLTGHGWDVKTVDWHPSKGLLASGSKDNLV 230
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.20
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 340 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 444
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/78 (21%), Positives = 36/78 (46%)
Frame = +1
Query: 286 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 465
+ +YK +G T + HD ++ + + + ++T S D +W++GD G + L
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAGAF-ECL 426
Query: 466 VLLRINRAATCVKWSPME 519
+ + C+ W+ E
Sbjct: 427 HVFSFSSPVNCIDWNLRE 444
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.27
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +1
Query: 298 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 429
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.36
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = +1
Query: 220 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDL-RVMGIDWAP-NTNRI 393
PI WN S++A S ++ V ++ + D+K T L V + W P +++R+
Sbjct: 26 PIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGNRGYGLVEQLVWDPTHSDRL 85
Query: 394 VTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLIS 558
+ + W D + A + + N WSP N S ++S
Sbjct: 86 MAVYAGKMIRFW----DFRSAKPIAEIESNYENIYATWSPSGNYCCASSRDDMLS 136
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.5 bits (63), Expect = 0.47
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -1
Query: 537 PDSKLVLHGRPFHASRCSVDTQKNKSS----CPFPIISLSPDVSITVNRTRNNTVGVGSP 370
PD K L R S+ QK SS F + + PD I R R+++ +
Sbjct: 433 PDDKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFSTLKI-PDSDICFTRRRSDSNRTWTV 491
Query: 369 INPHHSKVVFHKVVCLLP 316
I+PHHS+ + ++ +P
Sbjct: 492 IDPHHSQSFDNDILAEIP 509
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.5 bits (63), Expect = 0.47
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 208 DSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTN 387
D ITC A + D I ++ + I ++ + + H VMG+ TN
Sbjct: 206 DHVKEITCLAISNDGRWIVTGGLDHRIVI--RDSVTLEPQHCWKHHRDAVMGLAMRRGTN 263
Query: 388 RIVTCSVDRNAYVWT 432
+ +CS DR+ VW+
Sbjct: 264 EMFSCSADRSIKVWS 278
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.63
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +1
Query: 376 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL-LRINRA-----ATCVKWSPMEN-KFAV 534
P +N IVTCS D ++W + + T+ L +++ + ATC+ + P N +F V
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDMFSRPSETICLSSQVDSSSQCIPATCLSFIPENNMEFLV 362
Query: 535 GS 540
G+
Sbjct: 363 GA 364
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 220 PITCHAWNKDRSQIAFSPNNNEVHIYK 300
P+ AW ++ +A N VHIYK
Sbjct: 510 PLNKIAWQPEKRNLACGGLNGNVHIYK 536
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.83
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 334 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 429
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 28.7 bits (61), Expect = 0.83
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Frame = +1
Query: 334 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC-VKWS 510
L+ H V G ++P+ +++CS D +A +W+ D K T LV + + V +
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWSV--DTK--TALVAYKGHTGPVWDVAFG 430
Query: 511 PMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIR------STVTSIDWHPNNILLVA 672
P + FA S ++ W HI P+R S V + +HPN+ ++
Sbjct: 431 PFGHYFATAS---------HDQTAQLWSCDHI-YPLRVFAGHLSDVDCVTFHPNSAYVLT 480
Query: 673 G 675
G
Sbjct: 481 G 481
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 468 NKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 358
NK S I SLSP ++ + N ++ +G+ +NPH
Sbjct: 408 NKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPH 444
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 220 PITCHAW--NKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 381
P C W ++ R Q N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 170 PAFCVNWCPSRWREQYIAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
Score = 25.8 bits (54), Expect = 5.8
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Frame = +1
Query: 388 RIVTCSVDRNAYVWTQGDDGK-WATTLVLLRINRAATCVKWS--PMENKFAVGSGARLIS 558
R+V+CS D+ V+ DD + WA T + + V W+ AV S R +
Sbjct: 28 RMVSCSADQRVKVYDFNDDTETWAITSEWRAGDASLMRVAWAHPSFGQVLAVCSLDRGVR 87
Query: 559 ICYFEKEN---NWWVSKHIKKPIRSTVTSIDWHP 651
I +K+N WV RS V I + P
Sbjct: 88 IYEEQKKNFESKTWVEVAKLMDARSAVLDISFCP 121
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +1
Query: 238 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 396
W++ Q+A N+N + ++ + + + EH V I W+P+ I+
Sbjct: 257 WDRSLGQLASGGNDNNLFVWDYRSS--RPLHKFEEHTAAVKAIGWSPHQRGIL 307
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 343 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWSPME 519
H+ + G+ W + ++ + D N +VW D + + L + AA + WSP
Sbjct: 248 HEQEICGLQWDRSLGQLASGGNDNNLFVW----DYRSSRPLHKFEEHTAAVKAIGWSP-H 302
Query: 520 NKFAVGSGARLISIC 564
+ + SG I C
Sbjct: 303 QRGILASGGGTIDRC 317
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 498 ASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFH 337
A S T N + P PI +L PD T++ + ++ + +G+ PHHS + H
Sbjct: 142 ADNSSSSTTSNPNVAP-PISTL-PDPVATISSSSSSHLDMGAIHPPHHSSLPPH 193
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.5 bits (58), Expect = 1.9
Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 1/134 (0%)
Frame = +1
Query: 235 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVD 411
AW++ F +N + Y N K L HD + + P+ V T S D
Sbjct: 346 AWDQHSENNFFIGTDNGIVYYCDARNLSKSVWQLQAHDGPISCLSVNPSVPSFVATGSTD 405
Query: 412 RNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWW 591
R +W D L + R TC + F + + + ++ N
Sbjct: 406 RVVKLWNTSDSSPKMVVSRDLDVGRVFTCSFTTDESTAFHLAASGSKGVVRVWDTATNPG 465
Query: 592 VSKHIKKPIRSTVT 633
V K + + VT
Sbjct: 466 VRKAFESRVTEEVT 479
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +1
Query: 229 CHAWNKDRSQIAFSPNNNEVH-----IYKKEGNDW-KQTNNLVEHD 348
CH+ + SQ+ SPN +E H + EGN+ + NN+V D
Sbjct: 66 CHSRSDVSSQVQNSPNKDEEHQTADLLASNEGNEKNNEENNVVSSD 111
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.4
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -1
Query: 345 VFHKVVCLLPVISFLFVYVNFIIVW 271
+FH V +L ++ + +++N++ VW
Sbjct: 245 IFHPVTYILAIVVPINIFLNYLFVW 269
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 493 TCVKWSPMENKFAVGSGARLISICYF 570
TCV WSP A+G L+SI F
Sbjct: 368 TCVTWSPDGKFIAIGGKDDLVSIYSF 393
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 343 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 429
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +1
Query: 343 HDLRVMGIDW-APNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 519
H V ++W N + + TCS+D + + W + + AT VKW+
Sbjct: 321 HTRAVTDMNWHRQNPDVLATCSIDSSVHCWDLRSPRFPVNS--FYDWHNGATQVKWNYKN 378
Query: 520 NKFAVGSGARLISI 561
S RL+ I
Sbjct: 379 PHILASSHGRLVRI 392
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 238 WNKDRSQIAFSPNNNEVHIYK-KEGNDWKQTNNLVEHDLRVMGIDW-APNTNRIVTCSVD 411
WN I S + V I+ + G+ T E+ ++ G+++ R++TC++D
Sbjct: 374 WNYKNPHILASSHGRLVRIWDDRYGSAPLHTIKTSENITKINGLEFNRACETRLLTCAMD 433
Query: 412 RNAYVW 429
R W
Sbjct: 434 RTVKFW 439
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +1
Query: 238 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 417
W+ D + + +N + +Y + + + +H V G+ W P IV+ S DR+
Sbjct: 136 WSVDSNFLIAGAMDNSLRLY--DAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVSESSDRS 193
Query: 418 AYVWTQGDDGK 450
++ ++ K
Sbjct: 194 ICLYEIQEEKK 204
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 337 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 471
V H L ++ I + N + +DR VW D +W T LVL
Sbjct: 592 VHHQLDILKIAVSENYKTFASVGLDRCLVVW---DLRQWCTKLVL 633
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 565 YFEKENNWWVSKHIKKPIRSTVTSID 642
YF+++N W + K KK ++ ++TS+D
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLD 54
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 655 YWDANQ*MSQSNEWA 611
+WDAN +SQ N+W+
Sbjct: 135 HWDANVTLSQENKWS 149
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 420 LRLDSRR*WEMGNYSCSSAYQPSSDLREMVSHGE-QVCCRV 539
LR D RR EM N+ C +PS + + G +V C V
Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIV 52
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +1
Query: 334 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWS 510
L H V G++W N N + + D VW + ++ L + AA + WS
Sbjct: 370 LTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEE----KPLYSFHNHIAAVKAITWS 425
Query: 511 PMENKFAVGSG 543
P + G
Sbjct: 426 PHQRGILASGG 436
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 193 TLTFGDSCAPITCHAWNKDRSQIAFSPNNN 282
T+TFG H WN S + PN++
Sbjct: 6 TVTFGRKSNFCWTHFWNTQESYFVYDPNDH 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,495
Number of Sequences: 5004
Number of extensions: 64274
Number of successful extensions: 255
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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