Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b22
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023812-1|AAZ66319.1|  933|Drosophila melanogaster RE19438p pro...    31   1.1  
AY089434-1|AAL90172.1|  933|Drosophila melanogaster AT25429p pro...    31   1.1  
AE014297-3787|AAF56459.1|  933|Drosophila melanogaster CG10669-P...    31   1.1  
BT011419-1|AAR96211.1|  285|Drosophila melanogaster AT05847p pro...    31   1.4  
AY118829-1|AAM50689.1|  387|Drosophila melanogaster GH28550p pro...    31   1.4  
AE014296-846|AAN11602.1|  273|Drosophila melanogaster CG11347-PC...    31   1.4  
AE014296-845|AAN11601.1|  387|Drosophila melanogaster CG11347-PD...    31   1.4  
AE014296-844|AAF47898.1|  387|Drosophila melanogaster CG11347-PB...    31   1.4  
AE014296-843|AAF47897.2|  387|Drosophila melanogaster CG11347-PA...    31   1.4  
AF358267-1|AAK40237.1|  939|Drosophila melanogaster sidestep pro...    31   1.9  
AE014297-4124|AAF56708.2|  939|Drosophila melanogaster CG31062-P...    31   1.9  
AE014298-1651|AAF48068.1| 1048|Drosophila melanogaster CG2247-PA...    30   2.5  
BT025214-1|ABF17905.1|  431|Drosophila melanogaster FI01031p pro...    29   4.4  
BT001812-1|AAN71567.1|  431|Drosophila melanogaster RH35726p pro...    29   4.4  
AE014298-992|AAF46234.1|  431|Drosophila melanogaster CG3032-PA ...    29   4.4  
AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p pro...    29   7.7  
AF136606-1|AAD33695.1|  414|Drosophila melanogaster DHR23 protein.     29   7.7  
AF132147-1|AAD33594.1|  414|Drosophila melanogaster DNA repair p...    29   7.7  
AE014298-905|AAF46171.2| 3166|Drosophila melanogaster CG3950-PA ...    29   7.7  
AE014135-61|AAN06526.1|  343|Drosophila melanogaster CG1836-PB, ...    29   7.7  
AE014135-60|AAF59352.1|  414|Drosophila melanogaster CG1836-PA, ...    29   7.7  
AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA ...    29   7.7  

>BT023812-1|AAZ66319.1|  933|Drosophila melanogaster RE19438p
           protein.
          Length = 933

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 245 LCWECIKKLKNIRDFKGQARKAQDQLLQLVKDPL 346
           LC+ C +KL++  DF  QAR+  +  LQ + D L
Sbjct: 53  LCYACAEKLESTYDFVLQARRTHELWLQKIGDSL 86


>AY089434-1|AAL90172.1|  933|Drosophila melanogaster AT25429p
           protein.
          Length = 933

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 245 LCWECIKKLKNIRDFKGQARKAQDQLLQLVKDPL 346
           LC+ C +KL++  DF  QAR+  +  LQ + D L
Sbjct: 53  LCYACAEKLESTYDFVLQARRTHELWLQKIGDSL 86


>AE014297-3787|AAF56459.1|  933|Drosophila melanogaster CG10669-PA
           protein.
          Length = 933

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 245 LCWECIKKLKNIRDFKGQARKAQDQLLQLVKDPL 346
           LC+ C +KL++  DF  QAR+  +  LQ + D L
Sbjct: 53  LCYACAEKLESTYDFVLQARRTHELWLQKIGDSL 86


>BT011419-1|AAR96211.1|  285|Drosophila melanogaster AT05847p
           protein.
          Length = 285

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 STNQSAHTSLCWECIKKLKNIRDFKGQARKAQDQLLQLVK 337
           S N+  H  LC   IK+   +RDF+ +A + +   +Q  K
Sbjct: 232 SKNKKEHQQLCRSAIKRANKVRDFQAKANRPRRSEMQHCK 271


>AY118829-1|AAM50689.1|  387|Drosophila melanogaster GH28550p
           protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 STNQSAHTSLCWECIKKLKNIRDFKGQARKAQDQLLQLVK 337
           S N+  H  LC   IK+   +RDF+ +A + +   +Q  K
Sbjct: 334 SKNKKEHQQLCRSAIKRANKVRDFQAKANRPRRSEMQHCK 373


>AE014296-846|AAN11602.1|  273|Drosophila melanogaster CG11347-PC,
           isoform C protein.
          Length = 273

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 STNQSAHTSLCWECIKKLKNIRDFKGQARKAQDQLLQLVK 337
           S N+  H  LC   IK+   +RDF+ +A + +   +Q  K
Sbjct: 220 SKNKKEHQQLCRSAIKRANKVRDFQAKANRPRRSEMQHCK 259


>AE014296-845|AAN11601.1|  387|Drosophila melanogaster CG11347-PD,
           isoform D protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 STNQSAHTSLCWECIKKLKNIRDFKGQARKAQDQLLQLVK 337
           S N+  H  LC   IK+   +RDF+ +A + +   +Q  K
Sbjct: 334 SKNKKEHQQLCRSAIKRANKVRDFQAKANRPRRSEMQHCK 373


>AE014296-844|AAF47898.1|  387|Drosophila melanogaster CG11347-PB,
           isoform B protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 STNQSAHTSLCWECIKKLKNIRDFKGQARKAQDQLLQLVK 337
           S N+  H  LC   IK+   +RDF+ +A + +   +Q  K
Sbjct: 334 SKNKKEHQQLCRSAIKRANKVRDFQAKANRPRRSEMQHCK 373


>AE014296-843|AAF47897.2|  387|Drosophila melanogaster CG11347-PA,
           isoform A protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 STNQSAHTSLCWECIKKLKNIRDFKGQARKAQDQLLQLVK 337
           S N+  H  LC   IK+   +RDF+ +A + +   +Q  K
Sbjct: 334 SKNKKEHQQLCRSAIKRANKVRDFQAKANRPRRSEMQHCK 373


>AF358267-1|AAK40237.1|  939|Drosophila melanogaster sidestep
           protein.
          Length = 939

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +2

Query: 557 DGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSEN 667
           DG+   N++V VHS+ ++GN T  +  +KV  S+++N
Sbjct: 359 DGEPIRNAEVTVHSDKEDGNITTSILTLKVT-SENDN 394


>AE014297-4124|AAF56708.2|  939|Drosophila melanogaster CG31062-PA
           protein.
          Length = 939

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +2

Query: 557 DGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSEN 667
           DG+   N++V VHS+ ++GN T  +  +KV  S+++N
Sbjct: 359 DGEPIRNAEVTVHSDKEDGNITTSILTLKVT-SENDN 394


>AE014298-1651|AAF48068.1| 1048|Drosophila melanogaster CG2247-PA
            protein.
          Length = 1048

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 74   KRIHLETKMALDSFNNLRRSLCG-GCLSSDRKLSETNYEYKHLFGELVGSTNQSAHTSLC 250
            +R+ LE K  +++   L   +CG     S ++L   N E   L   L+G      H  L 
Sbjct: 859  RRLRLENKHMINTTFPLYHIMCGVAAACSVQQLELVNVEVDDLLTSLIGMCTTVTHLLLV 918

Query: 251  WECIKKLKNI 280
             +C++   N+
Sbjct: 919  PKCLQNSANV 928


>BT025214-1|ABF17905.1|  431|Drosophila melanogaster FI01031p
           protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 245 LCWECIKKLKNIRDFKGQARKAQDQLLQLV-KDP 343
           LC EC   ++N   F+ +A + + QLL+++ KDP
Sbjct: 67  LCLECRSAVQNFEKFRRKADECRKQLLEMLKKDP 100


>BT001812-1|AAN71567.1|  431|Drosophila melanogaster RH35726p
           protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 245 LCWECIKKLKNIRDFKGQARKAQDQLLQLV-KDP 343
           LC EC   ++N   F+ +A + + QLL+++ KDP
Sbjct: 67  LCLECRSAVQNFEKFRRKADECRKQLLEMLKKDP 100


>AE014298-992|AAF46234.1|  431|Drosophila melanogaster CG3032-PA
           protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 245 LCWECIKKLKNIRDFKGQARKAQDQLLQLV-KDP 343
           LC EC   ++N   F+ +A + + QLL+++ KDP
Sbjct: 67  LCLECRSAVQNFEKFRRKADECRKQLLEMLKKDP 100


>AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p
           protein.
          Length = 70

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 10/38 (26%), Positives = 26/38 (68%)
 Frame = +2

Query: 263 KKLKNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSK 376
           +++K ++DF  +AR++  + +++ K+P  T  K++ S+
Sbjct: 3   REIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSR 40


>AF136606-1|AAD33695.1|  414|Drosophila melanogaster DHR23 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 371 SKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSV 511
           S + N + L++K +NKL S D+   +      +H N P  T+   SV
Sbjct: 77  SSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSV 123


>AF132147-1|AAD33594.1|  414|Drosophila melanogaster DNA repair
           protein Rad23 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 371 SKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSV 511
           S + N + L++K +NKL S D+   +      +H N P  T+   SV
Sbjct: 77  SSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSV 123


>AE014298-905|AAF46171.2| 3166|Drosophila melanogaster CG3950-PA
            protein.
          Length = 3166

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 180  LVSDNFLSELKQPPHNDRRRLLKESNA 100
            ++ + F S+ K PP ++R+ L+  SNA
Sbjct: 2920 VIEEQFYSDNKSPPRHERKELIYSSNA 2946


>AE014135-61|AAN06526.1|  343|Drosophila melanogaster CG1836-PB,
           isoform B protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 371 SKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSV 511
           S + N + L++K +NKL S D+   +      +H N P  T+   SV
Sbjct: 6   SSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSV 52


>AE014135-60|AAF59352.1|  414|Drosophila melanogaster CG1836-PA,
           isoform A protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 371 SKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSV 511
           S + N + L++K +NKL S D+   +      +H N P  T+   SV
Sbjct: 77  SSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSV 123


>AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA
           protein.
          Length = 70

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 10/38 (26%), Positives = 26/38 (68%)
 Frame = +2

Query: 263 KKLKNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSK 376
           +++K ++DF  +AR++  + +++ K+P  T  K++ S+
Sbjct: 3   REIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSR 40


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,685,741
Number of Sequences: 53049
Number of extensions: 560791
Number of successful extensions: 1744
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1744
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)