Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b22
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 557 DGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSE 664
           DGDD+ + +   + N D  N+ +   F   E +D E
Sbjct: 109 DGDDNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEE 144


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 519 IQVFWKLIHLTVMTEMTVQIQK 584
           I+V  KL++ TVM ++ V+ QK
Sbjct: 493 IRVVQKLVNTTVMRDLGVEFQK 514


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 259 Y*ETKKYSRFQRTSKESTRSAT 324
           Y   K+Y +++ TSKE +R  T
Sbjct: 50  YKNEKEYRKYRETSKERSRDRT 71


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 155 NSNSLRIMTAVGY*RNPMPFLFLNE 81
           NSN   +MT V    N M   ++NE
Sbjct: 462 NSNQFILMTTVNEGNNNMAATYMNE 486


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 259 Y*ETKKYSRFQRTSKESTRSAT 324
           Y   +KY +++  SKE +R  T
Sbjct: 50  YKNERKYRKYRERSKERSRDRT 71


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 259 Y*ETKKYSRFQRTSKESTRSAT 324
           Y   +KY +++  SKE +R  T
Sbjct: 50  YKNERKYRKYRERSKERSRDRT 71


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 351 VNNGSLTNWSS 319
           V NGS+TNW S
Sbjct: 340 VPNGSVTNWVS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,891
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)