Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21b21
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effec... 273 7e-74
U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effec... 273 7e-74
Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 31 0.58
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 31 0.58
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ... 29 2.3
Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical p... 28 7.1
AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical ... 28 7.1
AF047651-9|AAC02720.2| 509|Caenorhabditis elegans Hypothetical ... 28 7.1
>U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effect
lethal protein32, isoform a protein.
Length = 484
Score = 273 bits (670), Expect = 7e-74
Identities = 125/190 (65%), Positives = 152/190 (80%)
Frame = +1
Query: 115 LLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQ 294
+L ++ + DPE+FDI+ EK RQR GLE+IASENFTS V+ L S + NKYSEG P
Sbjct: 24 ILVDHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGA 83
Query: 295 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 474
RYYGGNE+ID++E+L Q R+LE + L +WGVNVQP SGSPANFAVYT IV +GRIMG
Sbjct: 84 RYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMG 143
Query: 475 LDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIA 654
LDLPDGGHLTHGFFT +K+SATS FF+S+PYKVDP +GLIDYDKL + A LF+P+ IIA
Sbjct: 144 LDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIA 203
Query: 655 GMSCYSRCLD 684
G+SCY+R LD
Sbjct: 204 GVSCYARHLD 213
>U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effect
lethal protein32, isoform b protein.
Length = 507
Score = 273 bits (670), Expect = 7e-74
Identities = 125/190 (65%), Positives = 152/190 (80%)
Frame = +1
Query: 115 LLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQ 294
+L ++ + DPE+FDI+ EK RQR GLE+IASENFTS V+ L S + NKYSEG P
Sbjct: 47 ILVDHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGA 106
Query: 295 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 474
RYYGGNE+ID++E+L Q R+LE + L +WGVNVQP SGSPANFAVYT IV +GRIMG
Sbjct: 107 RYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMG 166
Query: 475 LDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIA 654
LDLPDGGHLTHGFFT +K+SATS FF+S+PYKVDP +GLIDYDKL + A LF+P+ IIA
Sbjct: 167 LDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIA 226
Query: 655 GMSCYSRCLD 684
G+SCY+R LD
Sbjct: 227 GVSCYARHLD 236
>Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical
protein F09B9.1 protein.
Length = 710
Score = 31.5 bits (68), Expect = 0.58
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 536 DIFLVAVKKPWVRCPP 489
+ F +A +KPWVRCPP
Sbjct: 477 NFFTIAYEKPWVRCPP 492
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 551 NIDVADIFLVAVKKPWVRCPP 489
N D F +A KPW+RCPP
Sbjct: 461 NGDQTKFFNIAYSKPWIRCPP 481
>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
protein Y46G5A.4 protein.
Length = 2145
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 148 ELFDIIVKEKDRQRAGLEMI-ASENFTSVPVLQCLSSCLHNKYSEGMPNQ 294
ELF + +KEK + RA +E+I AS F +VP ++ + + +E +P Q
Sbjct: 1829 ELFSMSLKEKTKTRALIEIISASSEFGNVP-MRHKEDVILRQLAERLPGQ 1877
>Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical
protein C08H9.3a protein.
Length = 758
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -3
Query: 164 IISKSSGSASQRLLFSNLALIFVELMYLFAANVYTF 57
+ISK+ + + L+F ++IF +++Y+ +Y+F
Sbjct: 85 VISKTPRFSRRILIFQRFSVIFCDILYIAVCALYSF 120
>AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical
protein F52F10.3 protein.
Length = 684
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 551 NIDVADIFLVAVKKPWVRCPP 489
N D F + KPW+RCPP
Sbjct: 455 NGDHRYFFGIGYSKPWIRCPP 475
>AF047651-9|AAC02720.2| 509|Caenorhabditis elegans Hypothetical
protein C05D2.3 protein.
Length = 509
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -3
Query: 545 DVADIFLVAVKKPWVRCPPSGKSNPIILPWGSTMPV*TAKFA-GEPEYGCTLTPHS-SDF 372
D+ L +V W+ CPP + I L W + +F P +GC + S SD
Sbjct: 92 DIISSGLGSVGFTWIACPPITELEKITLDWLVDLTSLPVEFKNSHPGHGCGIIQSSASDS 151
Query: 371 NLYA 360
L A
Sbjct: 152 TLIA 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,981,013
Number of Sequences: 27780
Number of extensions: 351258
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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