Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21b16
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 0.23
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 1.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 1.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 1.6
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 3.7
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 24 4.8
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu... 24 4.8
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 24 6.4
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 24 6.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 6.4
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 23 8.5
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 0.23
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 260 EFEFILSKSSMVNLNLLNSKLDVFVLIVDRNLL 162
E + +L +N +LNS+ DV + ++D+NLL
Sbjct: 40 EAKLLLPNGMSLNETVLNSESDVVIYVLDQNLL 72
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 1 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 102
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 85 YLHYYIFKNYGVFEYCKSLTDHSLFTN 165
+L Y+ K YG+ YC L ++SL N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 1.6
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 70 IVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMST---KTSNLLLSKFKFTIEDF 240
I+ H++L + + Y +F CK T ++ L + + + S +L + +F+ +
Sbjct: 259 IIRHSFLLTAVRQTYNIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLNHEREFSTINM 318
Query: 241 DKINSNSVTSGFN 279
+K +SN N
Sbjct: 319 NKSSSNGTPDRAN 331
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 24.6 bits (51), Expect = 3.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 106 KNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDK 246
K+ G F+ K SLF + + S+MS TSN + + DFDK
Sbjct: 645 KSVGKFDSAKYDEISSLFQSLILSSMSADTSNFSNQE----LVDFDK 687
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 24.2 bits (50), Expect = 4.8
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 52 YLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFK 222
YL L + E+ Y+HYY+ Y +F Y TD L L + K S FK
Sbjct: 682 YLHLGKLSEN-YIHYYVDSMYALFIYS---TDIPLKAEPLVPDLPVKQLKEKASHFK 734
>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 137
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 37 VEATQYLT-LLLIVEHAYLHYYIFKNYGV 120
++ + +LT LLL + +AY+H ++ YG+
Sbjct: 10 IQKSPFLTKLLLPISNAYVHLSGYRKYGL 38
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 121 FEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINSN 258
FE+C++ + NKL T N L+ F ++++ + SN
Sbjct: 958 FEFCEAFEKRNFLQNKLSGNPIISTPN-FLTHFALAYQEYE-LESN 1001
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 23.8 bits (49), Expect = 6.4
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 269 DVTEFEFILSKSSMVNLNLL-NSKLDVFVLIVDRNLLVKSEWSVSDL 132
++T +E + S + N++ +DV + +DR LV+ W V L
Sbjct: 874 NITLYEILYSSEEEMPSNVIFYETMDVSLSDLDRKRLVRLRWLVDGL 920
Score = 23.4 bits (48), Expect = 8.5
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 70 IVEHAYLHYYIFKNYGV-FEYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFD 243
IV+ + H I + +G+ F + + + T KLR T+ + S KF + DFD
Sbjct: 1004 IVQVHHFHKDIARIHGIPFSFVIKPQEKFIDT-KLRLAARTQYPESIFSVIKFCVVDFD 1061
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 23.8 bits (49), Expect = 6.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 257 FEFILSKSSMVNLNLLNSKLDVFVLIVDRNLLVKSE 150
F+F+ S + LNLLN +L + V + + LV E
Sbjct: 610 FQFLFSPMDDILLNLLNKQLGIEVTEMTGSDLVYDE 645
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.4 bits (48), Expect = 8.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 115 GVFEYCKSLTDHSLFTNKLRSTMSTKTSNL 204
G F K T SLF NK +T +T NL
Sbjct: 54 GAFGQTKPQTGGSLFGNKPNATSTTPGLNL 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,736
Number of Sequences: 5004
Number of extensions: 17895
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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