Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b16
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624...    27   2.4  
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666...    27   4.2  
06_02_0013 - 10581449-10585105                                         26   7.4  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    26   7.4  
01_06_0203 - 27487469-27489787                                         26   7.4  

>03_06_0566 +
           34760991-34761186,34761283-34761455,34762370-34762416,
           34762546-34762640,34762734-34762816,34763331-34763399,
           34763874-34764059,34764374-34764508,34764774-34764908,
           34765148-34765218,34765393-34765470,34765626-34765767,
           34765940-34766050
          Length = 506

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  IVEHAYLHYYIFKNYGVFEYCKS 138
           I  H + HY++    GV+EYC+S
Sbjct: 127 IKNHKWGHYFMCGYKGVYEYCRS 149


>10_08_0371 +
           17265691-17265788,17265873-17265971,17266586-17266628,
           17267250-17267321,17267400-17267495,17267609-17267842,
           17267914-17268097,17268247-17268358,17268447-17268533,
           17268703-17268841,17269628-17269718,17270045-17270154,
           17270309-17270413,17270982-17271055,17271379-17271454,
           17271786-17272022,17272419-17272490,17273082-17273153,
           17273240-17273304,17273306-17273383,17273384-17273486,
           17273769-17273858,17274873-17274980,17275063-17275113,
           17276126-17276203,17276284-17276346,17276944-17277140,
           17277243-17277312,17277640-17277828
          Length = 1030

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 136 SLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDF 240
           SLT  SLF N L+ST +  T NLL +     ++ F
Sbjct: 327 SLTTCSLFDNLLKSTRNYGTINLLSALTSEAVKSF 361


>06_02_0013 - 10581449-10585105
          Length = 1218

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 88  LHYYIFKNYGVFEYCKSLT-DHSLFTNKLRSTMSTKTSNLLLSKFKFTI 231
           L  Y F  Y VF YC +     SL    L  + S    NL L   +FT+
Sbjct: 120 LRVYFFPRYEVFFYCNATAFAASLVLIILLLSKSVTRQNLWLRSMQFTM 168


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 208 LSKFKFTIEDFDKINSNSV 264
           L KF+F +E   K+N NS+
Sbjct: 430 LKKFRFLVEQLSKVNPNSM 448


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 1   YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSL 141
           YD +L  +S+   + +  +T   IVE  Y+H    KN G+ EY   L
Sbjct: 250 YDGNLRIYSLDASDGSWTVTWQAIVEMHYVHGMCGKN-GICEYLPEL 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,796,431
Number of Sequences: 37544
Number of extensions: 89239
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)