Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21b16
(319 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110058-1|AAI10059.1| 518|Homo sapiens leucine rich repeat tra... 28 6.9
BC099738-1|AAH99738.1| 518|Homo sapiens leucine rich repeat tra... 28 6.9
BC098301-1|AAH98301.1| 519|Homo sapiens LRRTM4 protein protein. 28 6.9
BC098267-1|AAH98267.1| 519|Homo sapiens LRRTM4 protein protein. 28 6.9
AY358324-1|AAQ88690.1| 590|Homo sapiens GFHL3075 protein. 28 6.9
AY182030-1|AAO67551.1| 518|Homo sapiens leucine-rich repeat tra... 28 6.9
AK126961-1|BAC86764.1| 518|Homo sapiens protein ( Homo sapiens ... 28 6.9
AK128543-1|BAC87492.1| 1433|Homo sapiens protein ( Homo sapiens ... 27 9.1
>BC110058-1|AAI10059.1| 518|Homo sapiens leucine rich repeat
transmembrane neuronal 4 protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 DMDLSDFSITEVEATQYLTLL-LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRST 180
++DLS + +++ Q+ L LI+ H + VF+ C++L L N+LRS
Sbjct: 137 NLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSL 196
Query: 181 MSTKTSNLL-LSKFKFTIEDFDKINSNSVTSGFNI 282
+ LL L + F KIN FN+
Sbjct: 197 SRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNL 231
>BC099738-1|AAH99738.1| 518|Homo sapiens leucine rich repeat
transmembrane neuronal 4 protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 DMDLSDFSITEVEATQYLTLL-LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRST 180
++DLS + +++ Q+ L LI+ H + VF+ C++L L N+LRS
Sbjct: 137 NLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSL 196
Query: 181 MSTKTSNLL-LSKFKFTIEDFDKINSNSVTSGFNI 282
+ LL L + F KIN FN+
Sbjct: 197 SRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNL 231
>BC098301-1|AAH98301.1| 519|Homo sapiens LRRTM4 protein protein.
Length = 519
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 DMDLSDFSITEVEATQYLTLL-LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRST 180
++DLS + +++ Q+ L LI+ H + VF+ C++L L N+LRS
Sbjct: 138 NLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSL 197
Query: 181 MSTKTSNLL-LSKFKFTIEDFDKINSNSVTSGFNI 282
+ LL L + F KIN FN+
Sbjct: 198 SRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNL 232
>BC098267-1|AAH98267.1| 519|Homo sapiens LRRTM4 protein protein.
Length = 519
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 DMDLSDFSITEVEATQYLTLL-LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRST 180
++DLS + +++ Q+ L LI+ H + VF+ C++L L N+LRS
Sbjct: 138 NLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSL 197
Query: 181 MSTKTSNLL-LSKFKFTIEDFDKINSNSVTSGFNI 282
+ LL L + F KIN FN+
Sbjct: 198 SRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNL 232
>AY358324-1|AAQ88690.1| 590|Homo sapiens GFHL3075 protein.
Length = 590
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 DMDLSDFSITEVEATQYLTLL-LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRST 180
++DLS + +++ Q+ L LI+ H + VF+ C++L L N+LRS
Sbjct: 137 NLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSL 196
Query: 181 MSTKTSNLL-LSKFKFTIEDFDKINSNSVTSGFNI 282
+ LL L + F KIN FN+
Sbjct: 197 SRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNL 231
>AY182030-1|AAO67551.1| 518|Homo sapiens leucine-rich repeat
transmembrane neuronal 4 protein protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 DMDLSDFSITEVEATQYLTLL-LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRST 180
++DLS + +++ Q+ L LI+ H + VF+ C++L L N+LRS
Sbjct: 137 NLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSL 196
Query: 181 MSTKTSNLL-LSKFKFTIEDFDKINSNSVTSGFNI 282
+ LL L + F KIN FN+
Sbjct: 197 SRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNL 231
>AK126961-1|BAC86764.1| 518|Homo sapiens protein ( Homo sapiens
cDNA FLJ45014 fis, clone BRAWH3014609. ).
Length = 518
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 DMDLSDFSITEVEATQYLTLL-LIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRST 180
++DLS + +++ Q+ L LI+ H + VF+ C++L L N+LRS
Sbjct: 137 NLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSL 196
Query: 181 MSTKTSNLL-LSKFKFTIEDFDKINSNSVTSGFNI 282
+ LL L + F KIN FN+
Sbjct: 197 SRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNL 231
>AK128543-1|BAC87492.1| 1433|Homo sapiens protein ( Homo sapiens
cDNA FLJ46702 fis, clone TRACH3014183. ).
Length = 1433
Score = 27.5 bits (58), Expect = 9.1
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +1
Query: 19 DFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTS 198
D S+ +VE YL LLL HA + + V+E+CK L H L S + T S
Sbjct: 440 DHSV-KVEWGSYLHLLL---HAIFIGFDHCHPEVYEHCKRLLLHLLIVMGPNSNIRTVAS 495
Query: 199 NLLLSK 216
LL +K
Sbjct: 496 VLLRNK 501
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,421,980
Number of Sequences: 237096
Number of extensions: 517077
Number of successful extensions: 1114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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