Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21b16
(319 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine re... 32 0.078
Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical pr... 31 0.24
Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical pr... 31 0.24
Z92811-2|CAI46583.1| 299|Caenorhabditis elegans Hypothetical pr... 30 0.41
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 27 2.9
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 2.9
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 2.9
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 27 2.9
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 2.9
AC006693-6|AAF60383.2| 511|Caenorhabditis elegans Hypothetical ... 27 3.9
AC006693-4|AAF60381.2| 511|Caenorhabditis elegans Hypothetical ... 27 3.9
Z78412-7|CAB01652.1| 495|Caenorhabditis elegans Hypothetical pr... 26 6.8
Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical p... 26 6.8
Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical pr... 26 6.8
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein. 26 6.8
L03524-1|AAA28152.1| 495|Caenorhabditis elegans protein-tyrosin... 26 6.8
U13019-11|AAC24449.1| 445|Caenorhabditis elegans Hypothetical p... 25 8.9
AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical ... 25 8.9
AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine re... 25 8.9
>AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine
receptor, class w protein40 protein.
Length = 363
Score = 32.3 bits (70), Expect = 0.078
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 61 LLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLL 207
LL+I+ YYIF+ + E C S T HS+ L + +S+ NLL
Sbjct: 85 LLIIISFIIYFYYIFQASFIHEKCTSPTSHSML---LLAVLSSSIRNLL 130
>Z81565-5|CAB04583.1| 332|Caenorhabditis elegans Hypothetical
protein K04C1.6 protein.
Length = 332
Score = 30.7 bits (66), Expect = 0.24
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 13 LSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 183
LS+F +T E + + V H +LHYY ++ + SL SL TN ++S +
Sbjct: 78 LSNFFLTHNEHNMEVIFPVKVFH-FLHYYFAYAQYIYNFFISLNRFSLITNPIKSEL 133
>Z70267-8|CAA94216.1| 332|Caenorhabditis elegans Hypothetical
protein K04C1.6 protein.
Length = 332
Score = 30.7 bits (66), Expect = 0.24
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 13 LSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 183
LS+F +T E + + V H +LHYY ++ + SL SL TN ++S +
Sbjct: 78 LSNFFLTHNEHNMEVIFPVKVFH-FLHYYFAYAQYIYNFFISLNRFSLITNPIKSEL 133
>Z92811-2|CAI46583.1| 299|Caenorhabditis elegans Hypothetical
protein T01G1.4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 HAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTS--NLLLSKFKFTIEDFDKIN 252
H Y ++ +G F CK++ ++ + + S+K S N K F+ D D I+
Sbjct: 237 HVYFDDVLWPEFGYFNLCKAILNYQYYRTTVTKMTSSKVSDDNATSWKMNFSGNDRDLIS 296
Query: 253 SNS 261
S
Sbjct: 297 VKS 299
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 243 VKIFNGKFEFA*Q*IRRFCAHCRSQF 166
V++FNGKF F R+F C QF
Sbjct: 889 VQLFNGKFFFCTDKNRKFANTCHGQF 914
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 243 VKIFNGKFEFA*Q*IRRFCAHCRSQF 166
V++FNGKF F R+F C QF
Sbjct: 889 VQLFNGKFFFCTDKNRKFANTCHGQF 914
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 243 VKIFNGKFEFA*Q*IRRFCAHCRSQF 166
V++FNGKF F R+F C QF
Sbjct: 1008 VQLFNGKFFFCTDKNRKFANTCHGQF 1033
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 243 VKIFNGKFEFA*Q*IRRFCAHCRSQF 166
V++FNGKF F R+F C QF
Sbjct: 495 VQLFNGKFFFCTDKNRKFANTCHGQF 520
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 243 VKIFNGKFEFA*Q*IRRFCAHCRSQF 166
V++FNGKF F R+F C QF
Sbjct: 1008 VQLFNGKFFFCTDKNRKFANTCHGQF 1033
>AC006693-6|AAF60383.2| 511|Caenorhabditis elegans Hypothetical
protein W02H5.3 protein.
Length = 511
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 124 EYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINSNSVT 267
EY K + D+ L+ K+RS + S++ S DF SNS+T
Sbjct: 210 EYSKKIVDYILYVEKMRSENNYANSHIFASDETAVYLDF----SNSLT 253
>AC006693-4|AAF60381.2| 511|Caenorhabditis elegans Hypothetical
protein W02H5.4 protein.
Length = 511
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 124 EYCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTIEDFDKINSNSVT 267
EY K + D+ L+ K+RS + S++ S DF SNS+T
Sbjct: 210 EYSKKIVDYILYVEKMRSENNYANSHIFASDETAVYLDF----SNSLT 253
>Z78412-7|CAB01652.1| 495|Caenorhabditis elegans Hypothetical
protein M176.7 protein.
Length = 495
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 94 YYIFKNYGVFEYCKSLTDHSLFTN 165
+++F YG F +C+S+ D ++ N
Sbjct: 6 FFVFLIYGFFPHCQSINDGNIKIN 29
>Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical
protein T05H10.5c protein.
Length = 979
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 7 MDLSDFSITEVEATQYLTLLLIVE 78
MD+SD S+ +VE+ +LT L E
Sbjct: 12 MDISDASVADVESKDFLTSLFDCE 35
>Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical
protein T05H10.5a protein.
Length = 980
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 7 MDLSDFSITEVEATQYLTLLLIVE 78
MD+SD S+ +VE+ +LT L E
Sbjct: 12 MDISDASVADVESKDFLTSLFDCE 35
>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
Length = 1036
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 251 FILSKSSMVNLNLLNSKLDVFVLIVDRNLLVKSEWSVSDLQYSN 120
F+L KS +V+ N + VF + + ++S + + +LQY N
Sbjct: 125 FLLEKSRVVHQNEGDRNFHVFYQLCAGDKNLRSTFGIGELQYYN 168
>L03524-1|AAA28152.1| 495|Caenorhabditis elegans protein-tyrosine
kinase protein.
Length = 495
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 94 YYIFKNYGVFEYCKSLTDHSLFTN 165
+++F YG F +C+S+ D ++ N
Sbjct: 6 FFVFLIYGFFPHCQSINDGNIKIN 29
>U13019-11|AAC24449.1| 445|Caenorhabditis elegans Hypothetical
protein T12A2.1 protein.
Length = 445
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 269 DVTEFEFILSKSSMVNLNLLNSKLDVFVLIVDRN 168
DVTEF L M N+ +LN + V++VD N
Sbjct: 19 DVTEF---LIGDQMNNIKILNDSSNSLVILVDTN 49
>AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical
protein W06D4.4 protein.
Length = 630
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 85 YLHYYIFKNYGVFEYCKSLTD 147
Y+HYY N + E SLTD
Sbjct: 402 YIHYYKLTNVEIIEKVTSLTD 422
>AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine
receptor, class t protein65 protein.
Length = 354
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 85 YLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLL 207
Y + IFK Y L + F + LR +S K NLL
Sbjct: 61 YARFKIFKTYQTLSTLAILPKMTKFPSDLRENISYKLLNLL 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,596,839
Number of Sequences: 27780
Number of extensions: 95724
Number of successful extensions: 264
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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