Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b16
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   3.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   4.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    20   8.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 269 DVTEFEFILSK-SSMVNLNLLNSKLDVFVLIVDRNLLVKSE 150
           DV  F  I S+ + M  +++LN+   +F  + +RN + K E
Sbjct: 429 DVVTFTEICSRITPMEVVSMLNAMYSLFDTLTERNRVYKVE 469


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 10  DLSDFSITEVEATQYLTLLLIVE 78
           D+SD+    +     LT+ LIVE
Sbjct: 369 DISDYKFRHITEITILTVQLIVE 391


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 142 TDHSLFTNKLRSTMSTKTSNLLLS 213
           T H      LR T++   S LLLS
Sbjct: 124 TSHQHLRTHLRGTLTVNVSVLLLS 147


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 267 CYRI*IYFVKIF 232
           CY I +YFV +F
Sbjct: 219 CYGIWVYFVPLF 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 267 CYRI*IYFVKIF 232
           CY I +YFV +F
Sbjct: 95  CYGIWVYFVPLF 106


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 189 CAHCRSQFV 163
           C+HC  QFV
Sbjct: 40  CSHCDRQFV 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,113
Number of Sequences: 438
Number of extensions: 1156
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)