Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b14
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    34   0.013
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    27   1.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.3  

>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +1

Query: 418 YLQVLGSGARGVP--NTLYLFSDQKRYLF-NCGESTQRLAHEHKVKLSRLEHIFI 573
           YLQ +   +R       ++LF D KRY+F + GE  QR     +++LS+++ +F+
Sbjct: 14  YLQFVSVSSRDTSCIPCIHLFFDSKRYVFGSVGEGCQRAILSQQLRLSKIKDVFL 68


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 337 QTARIMEIQRGRQNFSKKSEKYSPSTVYLQVLGSGARGVPNTLYLFS--DQKR 489
           ++  I EI + R   SK   K+S   VY    GSG  G P T       DQ+R
Sbjct: 221 ESTNIQEISQSRTKISKPKFKFS---VYSDADGSGKDGQPGTWQTLGTVDQRR 270


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
 Frame = -1

Query: 341 VCAFGIVAKNSNSFLVELSV------E*QWKRIKLTKPLLDNLLILYMCSEVSAR*PQFT 180
           +CA+ I   N  S  V L V        +WKR+ L   L+  L I Y     S       
Sbjct: 256 LCAYAIPNCNDYSASVVLLVFKILINSDKWKRLDLRLQLIQCLAISYPLWSNSETWDPHR 315

Query: 179 SIRSFMFFIYFDNVKIITYFTDFF 108
           SIRSF   +   +   +  F +FF
Sbjct: 316 SIRSFNLDLLNSSFFSLKNFLNFF 339


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 461 VFGTPRAPDPKT*RYTVLGEYFSDFFEKFCLPLCI 357
           VF T  A  PK  R    G Y  +FF  F   LC+
Sbjct: 241 VFYTTYADFPKKIRLLYSGNYQGNFFPLFLSILCV 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,356
Number of Sequences: 5004
Number of extensions: 40554
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)