Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b14
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732...    56   2e-08
02_02_0728 + 13416481-13416889,13416979-13417065,13417220-134173...    31   0.52 
02_05_1050 - 33757432-33757664,33757767-33758645,33758720-337591...    29   3.7  
08_01_0481 + 4229084-4229262,4231083-4231148,4233138-4233255,423...    28   6.4  
02_05_1071 - 33876061-33877308,33877593-33877898                       28   6.4  
01_01_0094 - 730484-731570,732030-732715                               28   6.4  
07_03_0784 + 21505204-21505950                                         27   8.5  
07_03_0781 - 21477797-21478549                                         27   8.5  
06_01_0144 + 1089090-1091390                                           27   8.5  

>01_01_0926 +
           7324145-7324561,7324773-7324778,7325255-7325311,
           7325572-7325661,7325938-7325982,7326088-7326142,
           7326245-7326288,7326401-7326790,7327276-7327541,
           7328292-7328430,7328514-7328564,7329158-7329642,
           7329724-7330327,7330717-7331025
          Length = 985

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
 Frame = +1

Query: 421 LQVLGSG--ARGVPNTLYLFSDQKRYLFNCGESTQRLAHEHKVKLSRLEHIFIT 576
           +++LG+G   +    ++ LF D++R++FN GE  QR   EHK+KLS+++HIF+T
Sbjct: 159 VRILGTGMDTQDTSPSILLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLT 212


>02_02_0728 +
           13416481-13416889,13416979-13417065,13417220-13417351,
           13417474-13417539,13417754-13418919
          Length = 619

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 20/68 (29%), Positives = 27/68 (39%)
 Frame = -2

Query: 559 QVWTVSPYVHVLSAE*ILHS*IDTVSDQKKGTVCSALHELQILKLEDTQY*GNIFQTFLR 380
           ++W V PY        + H    TV   K    CS  H +  +    T Y GN+F  F  
Sbjct: 281 EIWKVKPYPRKGDELCLGHITEITVKSSKVAPECSKYHNVPAVVFALTGYTGNLFHDFTD 340

Query: 379 SSVCLFVS 356
             V LF +
Sbjct: 341 VLVPLFTT 348


>02_05_1050 -
           33757432-33757664,33757767-33758645,33758720-33759109,
           33759488-33759613,33760497-33760557
          Length = 562

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 256 SLIRFHCYSTDSSTKKLL 309
           SL+RFHCY+  +ST K L
Sbjct: 35  SLVRFHCYNAFASTDKYL 52


>08_01_0481 +
           4229084-4229262,4231083-4231148,4233138-4233255,
           4233620-4233711,4233805-4233883,4233959-4234052,
           4234296-4234408,4234811-4234856,4235364-4235404,
           4235492-4235647
          Length = 327

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 487 RYLFNCGESTQRLAHEHKVKLSRLEHIFITSKTW 588
           +Y F  G+  +   H ++  +  ++H+   SK+W
Sbjct: 195 KYAFRLGQKVRHKVHGYRAVICGMDHVCCESKSW 228


>02_05_1071 - 33876061-33877308,33877593-33877898
          Length = 517

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = +1

Query: 136 FTLSK*IKNIKLRMLVNCG*RALTSEHMYSISKLSSRGLVSLIRFHCYSTDSSTKKLLEF 315
           F LS     ++L ++      +   E+   +S  +S+   S    HCY T+ + +K   F
Sbjct: 113 FRLSPSDHMVRLDLIAKVHGTSQAEEYYRKLSTAASKKAASFPLLHCYVTERNVQKAETF 172

Query: 316 LATMPK 333
           +A + +
Sbjct: 173 MAELQR 178


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 361 QRGRQNFSKKSEKYSPSTVYLQVLGSGARGVPNTLYLFSDQKR 489
           +  +QN S  ++ Y PS VY Q++      + NTL +   +++
Sbjct: 480 RNSKQNMSSSTQVYYPSLVYNQLIQQEMGEITNTLNMHELERK 522


>07_03_0784 + 21505204-21505950
          Length = 248

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 397 KYSPSTVYLQVLGSGARGVPNTLYLFSDQ 483
           KY P+T YL VL SG    PN L L +D+
Sbjct: 105 KYDPTTGYLDVLQSGMT-YPNGLALSADR 132


>07_03_0781 - 21477797-21478549
          Length = 250

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 397 KYSPSTVYLQVLGSGARGVPNTLYLFSDQ 483
           KY P+T YL VL SG    PN L L +D+
Sbjct: 105 KYDPTTGYLDVLQSGMT-YPNGLALSADR 132


>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 451 VPNTLYLFSDQKRYLFNCGESTQRLAHEHKVKLSRLEHIFIT 576
           +P   YLFS+ K+     G+ST      H   LS L  + +T
Sbjct: 82  LPVMSYLFSEAKQAPLGVGDSTTTTRDAHSDDLSLLARVILT 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,793
Number of Sequences: 37544
Number of extensions: 212671
Number of successful extensions: 457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)