Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b14
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-5|AAT27250.1|  760|Caenorhabditis elegans Homolog of el...    44   1e-04
AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of el...    44   1e-04
U10414-12|AAA19079.3|  497|Caenorhabditis elegans Nematode astac...    27   10.0 
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    27   10.0 
AJ561217-1|CAD99197.1|  210|Caenorhabditis elegans NAS-28 protei...    27   10.0 
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    27   10.0 
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    27   10.0 

>AF038611-5|AAT27250.1|  760|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform b
           protein.
          Length = 760

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +1

Query: 406 PSTVYLQVLGSGARGVPNTLYLFSDQKRYLFNCGESTQRLAHEHKVKLSRLEHIFITSKT 585
           PS V ++VLG+G   +     L +  K Y+FNC E+  R   + +++ S +  +FITS  
Sbjct: 23  PSQVSIEVLGNGTGLLRACFILRTPLKTYMFNCPENACRFLWQLRIRSSSVVDLFITSAN 82

Query: 586 W 588
           W
Sbjct: 83  W 83


>AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform a
           protein.
          Length = 833

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +1

Query: 406 PSTVYLQVLGSGARGVPNTLYLFSDQKRYLFNCGESTQRLAHEHKVKLSRLEHIFITSKT 585
           PS V ++VLG+G   +     L +  K Y+FNC E+  R   + +++ S +  +FITS  
Sbjct: 96  PSQVSIEVLGNGTGLLRACFILRTPLKTYMFNCPENACRFLWQLRIRSSSVVDLFITSAN 155

Query: 586 W 588
           W
Sbjct: 156 W 156


>U10414-12|AAA19079.3|  497|Caenorhabditis elegans Nematode astacin
           protease protein28 protein.
          Length = 497

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 141 IIKINKKHKTTDACKLRLTCTN 206
           II +NK +  T  CK+++ C+N
Sbjct: 309 IIGVNKLYNCTSQCKIQMKCSN 330


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = +1

Query: 226 ISKLSSRGLVSLIRFHCYSTDSSTKKLLEFLATMPKAQTARIMEIQRGRQNFSKKSEKYS 405
           I K    G + L +   + TDS  + LLE   ++P  ++A   +++   +  +    +  
Sbjct: 478 IEKNEQSGELFLRKIPIFITDSDARILLEIGKSLPHVESASDSDLEAIDKATTVVRTQLG 537

Query: 406 PSTVYLQVLG 435
           P  ++ ++LG
Sbjct: 538 PKAIFSKILG 547


>AJ561217-1|CAD99197.1|  210|Caenorhabditis elegans NAS-28 protein
           protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 141 IIKINKKHKTTDACKLRLTCTN 206
           II +NK +  T  CK+++ C+N
Sbjct: 115 IIGVNKLYNCTSQCKIQMKCSN 136


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = +1

Query: 226 ISKLSSRGLVSLIRFHCYSTDSSTKKLLEFLATMPKAQTARIMEIQRGRQNFSKKSEKYS 405
           I K    G + L +   + TDS  + LLE   ++P  ++A   +++   +  +    +  
Sbjct: 478 IEKNEQSGELFLRKIPIFITDSDARILLEIGKSLPHVESASDSDLEAIDKATTVVRTQLG 537

Query: 406 PSTVYLQVLG 435
           P  ++ ++LG
Sbjct: 538 PKAIFSKILG 547


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = +1

Query: 226 ISKLSSRGLVSLIRFHCYSTDSSTKKLLEFLATMPKAQTARIMEIQRGRQNFSKKSEKYS 405
           I K    G + L +   + TDS  + LLE   ++P  ++A   +++   +  +    +  
Sbjct: 478 IEKNEQSGELFLRKIPIFITDSDARILLEIGKSLPHVESASDSDLEAIDKATTVVRTQLG 537

Query: 406 PSTVYLQVLG 435
           P  ++ ++LG
Sbjct: 538 PKAIFSKILG 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,966,252
Number of Sequences: 27780
Number of extensions: 228029
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)