Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b14
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   5.2  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   5.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.0  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +1

Query: 271 HCYSTDSSTKKLLEFLATMPKAQTARIMEIQRGRQNFSKKSEKYSPSTVYLQVL 432
           HC    ++   +++FL      + + I  ++R ++    K E  +   V L+VL
Sbjct: 85  HCAGVITALNNVIDFLHDPGLMEASLIGLVERHKKRGQTKEEFQNLKEVMLEVL 138


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +1

Query: 271 HCYSTDSSTKKLLEFLATMPKAQTARIMEIQRGRQNFSKKSEKYSPSTVYLQVL 432
           HC    ++   +++FL      + + I  ++R ++    K E  +   V L+VL
Sbjct: 85  HCAGVITALNNVIDFLHDPGLMEASLIGLVERHKKRGQTKEEFQNLKEVMLEVL 138


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 402 IFFRLF*EVLSASLYLHYSSCLCF 331
           +F R+F  +    L  H+S CL F
Sbjct: 275 VFMRIFNLICMMLLIGHWSGCLQF 298


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 402 IFFRLF*EVLSASLYLHYSSCLCF 331
           +F R+F  +    L  H+S CL F
Sbjct: 243 VFMRIFNLICMMLLIGHWSGCLQF 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,733
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)